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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.5 nTPM
HPA:80.5 nTPM
GTEx:64.5 nTPM
FANTOM5:73.9 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:82.6 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.4
1870 Female, age 42, unknown 79.7
1827 Male, age 72, unknown 78.6
2666 Male, age 74, left hemisphere 78.0
2019 Male, age 18, unknown 77.6
2411 Female, age 72, unknown 76.6
1833 Male, age 53, unknown 75.8
2828 Female, age 72, unknown 75.5
2219 Male, age 76, both hemispheres 75.1
1830 Male, age 51, unknown 73.9
2586 Male, age 75, left hemisphere 72.8
Dorsal raphe nucleus
nTPM: 77.7
2298 Female, age 72, unknown 80.6
2016 Female, age 72, unknown 77.5
2047 Male, age 72, unknown 77.5
1828 Male, age 53, unknown 77.0
2750 Male, age 76, both hemispheres 76.0
Inferior colliculus
nTPM: 79.6
2097 Female, age 72, unknown 81.3
1848 Female, age 42, unknown 79.5
1890 Male, age 53, unknown 78.9
2849 Male, age 72, unknown 78.9
Median raphe nucleus
nTPM: 78.6
2220 Male, age 76, midline 78.6
Pedunculopontine tegmental nucleus
nTPM: 78.4
1921 Female, age 85, both hemispheres 80.4
2334 Male, age 80, both hemispheres 78.7
2338 Male, age 61, both hemispheres 76.1
Periaquaductal grey, anterior
nTPM: 77.5
1947 Male, age 18, unknown 78.7
1795 Male, age 51, unknown 77.5
2502 Female, age 75, unknown 76.5
Periaquaductal grey, dorsal
nTPM: 76.9
1840 Male, age 53, unknown 80.2
1831 Male, age 72, unknown 76.6
2850 Male, age 76, both hemispheres 76.4
2464 Female, age 72, unknown 74.5
Periaquaductal grey, lateral
nTPM: 76.5
2053 Male, age 18, unknown 78.4
2140 Male, age 76, both hemispheres 75.6
2272 Male, age 74, both hemispheres 75.6
Pretectal area
nTPM: 79.7
1816 Male, age 51, unknown 83.9
1817 Female, age 42, unknown 82.4
1815 Male, age 53, unknown 81.8
1944 Female, age 72, unknown 81.6
2224 Female, age 72, unknown 80.7
2007 Male, age 72, unknown 79.5
2667 Female, age 75, unknown 78.4
2273 Male, age 74, both hemispheres 78.3
2825 Male, age 18, unknown 77.8
2407 Male, age 75, both hemispheres 76.6
2316 Male, age 76, right hemisphere 75.3
Red nucleus
nTPM: 75.8
1821 Female, age 72, unknown 82.4
2725 Female, age 75, unknown 76.2
1954 Female, age 42, unknown 76.1
2503 Female, age 72, unknown 76.0
2823 Male, age 76, right hemisphere 75.9
2769 Male, age 72, unknown 75.8
2588 Male, age 74, left hemisphere 75.7
2785 Male, age 18, unknown 75.6
1865 Male, age 51, unknown 74.8
1904 Male, age 53, unknown 74.4
2227 Male, age 72, unknown 73.6
2584 Male, age 75, left hemisphere 73.0
Substantia nigra
nTPM: 80.5
2409 Female, age 72, unknown 83.1
1889 Female, age 72, unknown 82.9
2241 Male, age 72, unknown 82.8
2590 Female, age 75, unknown 81.5
1851 Male, age 51, unknown 81.3
1941 Male, age 53, unknown 79.9
1916 Female, age 42, unknown 79.5
2583 Male, age 75, right hemisphere 78.7
2665 Male, age 74, both hemispheres 78.2
2699 Male, age 18, unknown 77.3
Superior colliculus
nTPM: 77.8
2587 Male, age 74, left hemisphere 80.0
1913 Female, age 42, unknown 78.8
1895 Male, age 76, right hemisphere 78.7
2087 Female, age 72, unknown 78.6
2668 Female, age 75, unknown 78.3
2261 Male, age 18, unknown 78.1
1839 Male, age 51, unknown 77.4
1796 Male, age 53, unknown 76.9
1995 Male, age 72, unknown 76.9
2664 Male, age 75, both hemispheres 74.5
Ventral tegmental area
nTPM: 78.3
2223 Female, age 72, unknown 79.3
1915 Female, age 42, unknown 79.0
2410 Female, age 72, unknown 78.2
1942 Male, age 51, unknown 77.9
2021 Male, age 53, unknown 77.7
2218 Male, age 76, both hemispheres 77.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 139

Max nTPM: 102.6
Min nTPM: 41.0
Std nTPM: 10.5
Median nTPM: 63.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 102.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 88.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 86.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 84.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 83.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 81.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 81.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 81.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 81.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.9
FF:10158-103A5 76 years, female 73.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 18.5
Sample C Male 17.0
Sample D Male 17.0
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 15.9
Min nTPM: 13.8
Sample B Female 15.9
Sample C Male 15.2
Sample D Male 13.8
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.9
Sample A Female 16.1
Sample B Female 15.2
Sample C Male 12.8
Sample D Male 11.9
Superior colliculi
nTPM: 17.0
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.8
Sample A Female 18.5
Sample B Female 17.8
Sample C Male 16.7
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 82.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.7
Samples: 4

Max nTPM: 86.9
Min nTPM: 77.1
Sample A Male 86.9
Sample B Male 83.9
Sample C Female 77.1
Sample D Female 82.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
74990524 Antisense, RP_060410_01_C07, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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