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SERINC5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:18.0 nTPM
HPA:18.0 nTPM
GTEx:13.8 nTPM
FANTOM5:50.8 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:38.1 nTPM
Allen mouse:4.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037898Antibody HPA037899
Glial cells Not detectedMedium
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Hippocampus
nTPM: 14.1
2529 Female, age 94, left hemisphere 16.7
1911 Female, age 85, right hemisphere 15.9
1855 Male, age 76, left hemisphere 15.4
1898 Male, age 80, left hemisphere 14.2
2621 Female, age 67, right hemisphere 11.3
2148 Female, age 91, left hemisphere 10.9
Dentate gyrus
nTPM: 12.7
2530 Female, age 94, left hemisphere 17.8
2010 Male, age 76, both hemispheres 15.7
2528 Male, age 74, both hemispheres 15.2
2246 Female, age 85, both hemispheres 12.0
2531 Female, age 67, both hemispheres 8.6
1927 Female, age 91, both hemispheres 7.1
Entorhinal gyrus
nTPM: 14.5
2117 Female, age 91, right hemisphere 23.6
2764 Male, age 80, right hemisphere 15.9
1787 Male, age 76, left hemisphere 13.4
1938 Female, age 85, left hemisphere 12.2
2686 Male, age 75, right hemisphere 11.2
2613 Female, age 94, left hemisphere 10.9
Hippocampus, CA1
nTPM: 12.8
2527 Male, age 74, both hemispheres 16.8
2082 Female, age 91, right hemisphere 16.6
1873 Female, age 85, both hemispheres 13.1
2749 Male, age 80, left hemisphere 9.9
2045 Male, age 76, both hemispheres 7.7
Hippocampus, CA2
nTPM: 14.1
2249 Male, age 74, both hemispheres 19.6
2113 Female, age 91, right hemisphere 17.9
1963 Male, age 80, left hemisphere 15.6
2437 Female, age 94, left hemisphere 12.7
1940 Female, age 85, left hemisphere 12.4
1892 Male, age 76, both hemispheres 6.6
Hippocampus, CA3
nTPM: 12.3
1891 Female, age 85, both hemispheres 18.6
2436 Male, age 74, both hemispheres 14.5
1867 Male, age 76, both hemispheres 13.3
2137 Male, age 80, left hemisphere 12.5
2861 Female, age 67, both hemispheres 8.4
2620 Female, age 94, left hemisphere 6.4
Parahippocampal cortex
nTPM: 12.5
2692 Male, age 74, both hemispheres 18.3
2018 Male, age 76, both hemispheres 14.6
1990 Female, age 91, right hemisphere 13.5
1850 Male, age 80, both hemispheres 13.0
2532 Female, age 72, left hemisphere 12.5
2693 Female, age 94, both hemispheres 11.9
1933 Female, age 85, both hemispheres 11.7
2250 Female, age 67, right hemisphere 11.3
2245 Female, age 91, both hemispheres 10.5
2622 Female, age 67, right hemisphere 7.2
Perirhinal gyrus
nTPM: 10.6
1847 Female, age 91, left hemisphere 11.5
1794 Male, age 80, right hemisphere 11.4
2521 Female, age 94, right hemisphere 11.3
1841 Female, age 85, right hemisphere 9.4
2848 Male, age 76, right hemisphere 9.4
Subiculum
nTPM: 18.0
2042 Male, age 76, both hemispheres 25.7
1901 Male, age 80, both hemispheres 20.0
1977 Female, age 85, both hemispheres 16.9
2619 Male, age 74, both hemispheres 15.7
2729 Female, age 91, right hemisphere 15.7
2438 Female, age 94, left hemisphere 14.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.8
Samples: 197

Max nTPM: 35.8
Min nTPM: 3.6
Std nTPM: 6.0
Median nTPM: 12.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 35.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 34.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 32.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 30.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 28.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 27.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 26.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 26.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 25.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 24.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.8
FF:10153-102I9 76 years, female 65.1
FF:10169-103B7 60 years, female 36.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.0
Sample A Female 17.3
Sample B Female 14.7
Sample C Male 15.7
Sample D Male 12.0
Entorhinal cortex
nTPM: 17.2
Samples: 4

Max nTPM: 19.6
Min nTPM: 14.1
Sample A Female 19.6
Sample B Female 17.4
Sample C Male 17.8
Sample D Male 14.1
Subiculum
nTPM: 18.4
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.3
Sample A Female 19.3
Sample B Female 17.3
Sample C Male 18.6
Sample D Male 18.5
Ventral hippocampus
nTPM: 16.4
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.3
Sample A Female 15.3
Sample B Female 15.3
Sample C Male 19.5
Sample D Male 15.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.9
Samples: 4

Max nTPM: 32.3
Min nTPM: 23.0
Sample A Male 32.3
Sample B Male 25.8
Sample C Female 26.4
Sample D Female 23.0
Hippocampal formation
nTPM: 38.1
Samples: 4

Max nTPM: 48.5
Min nTPM: 30.7
Sample A Male 30.7
Sample B Male 38.4
Sample C Female 48.5
Sample D Female 34.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.9
68745570 Antisense, RP_050210_02_C01, Mouse strain C57BL/6J (56 days, male) 6.8
77790714 Antisense, RP_070208_04_A07, Mouse strain C57BL/6J (56 days, male) 4.5
77278973 Antisense, RP_070116_01_A06, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.