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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		3.103
RNA expressioni
Consensus:28.0 nTPM
HPA:28.0 nTPM
GTEx:34.2 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Pig:209.0 nTPM
Mouse:6.2 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046278Antibody CAB025515
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079776
Hippocampal formation mean intensity 3.103
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 0.070
Molecular layer of the dentate gyrus 0.026
Granular dentate gyrus 0.038
CA1 - oriens layer 0.043
CA1 - pyramidal layer 1.680
CA1 - radiatum layer 0.053
CA2 - oriens layer 0.048
CA2 - pyramidal layer 0.214
CA2 - radiatum layer 0.202
CA3 - oriens layer 0.037
CA3 - pyramidal layer 0.002
CA3 - radiatum layer 0.044
Stratum lucidum 0.016
Lacunosum moleculare 0.030
Subiculum 0.045

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Hippocampus
nTPM: 16.5
2621 Female, age 67, right hemisphere 27.8
1911 Female, age 85, right hemisphere 18.5
1898 Male, age 80, left hemisphere 17.0
1855 Male, age 76, left hemisphere 14.4
2148 Female, age 91, left hemisphere 14.3
2529 Female, age 94, left hemisphere 7.2
Dentate gyrus
nTPM: 25.1
1927 Female, age 91, both hemispheres 77.1
2010 Male, age 76, both hemispheres 17.6
2246 Female, age 85, both hemispheres 17.6
2530 Female, age 94, left hemisphere 16.4
2528 Male, age 74, both hemispheres 11.1
2531 Female, age 67, both hemispheres 11.1
Entorhinal gyrus
nTPM: 7.5
1787 Male, age 76, left hemisphere 18.0
2613 Female, age 94, left hemisphere 7.9
1938 Female, age 85, left hemisphere 6.2
2686 Male, age 75, right hemisphere 4.8
2764 Male, age 80, right hemisphere 4.2
2117 Female, age 91, right hemisphere 3.8
Hippocampus, CA1
nTPM: 28.0
2082 Female, age 91, right hemisphere 55.4
1873 Female, age 85, both hemispheres 30.9
2749 Male, age 80, left hemisphere 30.7
2045 Male, age 76, both hemispheres 14.2
2527 Male, age 74, both hemispheres 8.5
Hippocampus, CA2
nTPM: 22.8
1892 Male, age 76, both hemispheres 62.7
1940 Female, age 85, left hemisphere 28.1
1963 Male, age 80, left hemisphere 19.9
2437 Female, age 94, left hemisphere 11.4
2249 Male, age 74, both hemispheres 8.9
2113 Female, age 91, right hemisphere 6.0
Hippocampus, CA3
nTPM: 16.0
2137 Male, age 80, left hemisphere 32.0
2861 Female, age 67, both hemispheres 23.1
1867 Male, age 76, both hemispheres 15.9
2620 Female, age 94, left hemisphere 9.5
2436 Male, age 74, both hemispheres 8.2
1891 Female, age 85, both hemispheres 7.3
Parahippocampal cortex
nTPM: 16.8
2250 Female, age 67, right hemisphere 59.5
2245 Female, age 91, both hemispheres 27.1
1990 Female, age 91, right hemisphere 24.6
1933 Female, age 85, both hemispheres 15.5
2532 Female, age 72, left hemisphere 7.8
2693 Female, age 94, both hemispheres 7.6
2018 Male, age 76, both hemispheres 7.3
2622 Female, age 67, right hemisphere 7.2
2692 Male, age 74, both hemispheres 6.0
1850 Male, age 80, both hemispheres 5.1
Perirhinal gyrus
nTPM: 22.7
2521 Female, age 94, right hemisphere 53.1
1847 Female, age 91, left hemisphere 32.0
1841 Female, age 85, right hemisphere 13.5
1794 Male, age 80, right hemisphere 9.3
2848 Male, age 76, right hemisphere 5.6
Subiculum
nTPM: 10.7
2042 Male, age 76, both hemispheres 18.1
1901 Male, age 80, both hemispheres 16.0
2438 Female, age 94, left hemisphere 8.2
2729 Female, age 91, right hemisphere 8.0
2619 Male, age 74, both hemispheres 7.1
1977 Female, age 85, both hemispheres 6.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.2
Samples: 197

Max nTPM: 280.8
Min nTPM: 1.6
Std nTPM: 36.3
Median nTPM: 21.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 280.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 168.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 167.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 141.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 118.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 115.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 105.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 104.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 103.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 102.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 102.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 110.5
FF:10169-103B7 60 years, female 193.5
FF:10153-102I9 76 years, female 27.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 209.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 49.3
Samples: 4

Max nTPM: 99.9
Min nTPM: 17.1
Sample A Female 99.9
Sample B Female 54.7
Sample C Male 17.1
Sample D Male 25.3
Entorhinal cortex
nTPM: 19.7
Samples: 4

Max nTPM: 26.0
Min nTPM: 13.9
Sample A Female 22.4
Sample B Female 26.0
Sample C Male 13.9
Sample D Male 16.4
Subiculum
nTPM: 43.2
Samples: 4

Max nTPM: 53.5
Min nTPM: 32.2
Sample A Female 40.3
Sample B Female 32.2
Sample C Male 53.5
Sample D Male 46.7
Ventral hippocampus
nTPM: 209.0
Samples: 4

Max nTPM: 513.9
Min nTPM: 16.6
Sample A Female 513.9
Sample B Female 28.8
Sample C Male 276.8
Sample D Male 16.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.2
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.2
Sample A Male 6.1
Sample B Male 5.2
Sample C Female 5.2
Sample D Female 8.4
Hippocampal formation
nTPM: 2.8
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.5
Sample A Male 3.3
Sample B Male 1.5
Sample C Female 3.0
Sample D Female 3.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
79677369 Antisense, RP_071204_02_B05, Mouse strain C57BL/6J (56 days, male) 0.3
72077479 Antisense, RP_051017_03_B03, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.