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ACSL6
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:18.3 nTPM
HPA:18.3 nTPM
GTEx:22.5 nTPM
FANTOM5:48.6 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA040470
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.1
2481 Female, age 94, left hemisphere 19.8
2288 Male, age 75, left hemisphere 12.6
1857 Female, age 85, left hemisphere 11.7
1781 Male, age 74, unknown 11.1
1854 Male, age 80, left hemisphere 10.3
2290 Female, age 72, unknown 10.2
2846 Female, age 79, unknown 7.7
2289 Male, age 61, right hemisphere 5.5
Claustrum
nTPM: 8.8
2568 Male, age 61, both hemispheres 14.0
2198 Male, age 80, both hemispheres 13.9
2491 Male, age 75, both hemispheres 13.1
2284 Female, age 91, both hemispheres 12.2
2645 Female, age 72, unknown 7.3
2392 Female, age 94, both hemispheres 6.7
1956 Male, age 74, unknown 6.2
2196 Female, age 79, unknown 4.3
2292 Female, age 85, both hemispheres 1.3
Globus pallidus, externus
nTPM: 7.5
2772 Female, age 79, unknown 16.3
1996 Male, age 80, right hemisphere 9.5
2646 Male, age 61, right hemisphere 7.8
2395 Male, age 75, both hemispheres 3.9
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 7.3
2483 Female, age 94, right hemisphere 16.5
1818 Male, age 74, unknown 13.1
2037 Male, age 80, right hemisphere 7.7
2287 Male, age 75, right hemisphere 7.1
2778 Female, age 91, both hemispheres 5.8
2566 Female, age 72, unknown 0.7
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 9.6
2286 Male, age 75, left hemisphere 21.5
1856 Female, age 91, right hemisphere 15.3
2824 Male, age 61, right hemisphere 8.3
2391 Female, age 94, left hemisphere 8.2
1806 Female, age 85, left hemisphere 7.1
1783 Male, age 74, unknown 6.4
2732 Male, age 80, right hemisphere 5.2
2698 Female, age 72, unknown 4.6
Nucleus basalis of Meynert
nTPM: 8.6
2569 Male, age 61, both hemispheres 12.8
2484 Female, age 94, left hemisphere 11.0
2393 Male, age 80, right hemisphere 8.5
2821 Male, age 75, both hemispheres 2.0
Nucleus of the diagonal band
nTPM: 16.8
2775 Male, age 80, right hemisphere 20.7
1812 Female, age 91, both hemispheres 19.0
2195 Female, age 85, both hemispheres 18.3
2029 Male, age 61, right hemisphere 16.3
1979 Male, age 74, unknown 9.5
Olfactory tubercle
nTPM: 18.3
1998 Female, age 91, both hemispheres 22.8
2856 Male, age 75, right hemisphere 20.2
1846 Male, age 80, right hemisphere 18.4
2487 Female, age 94, left hemisphere 11.6
Putamen
nTPM: 10.8
1937 Female, age 91, right hemisphere 14.3
2482 Female, age 94, left hemisphere 13.3
2466 Female, age 79, unknown 12.0
1838 Male, age 80, right hemisphere 10.6
2647 Male, age 75, left hemisphere 10.6
1829 Male, age 74, unknown 7.6
2489 Female, age 72, unknown 7.2
Septal nuclei
nTPM: 15.4
1960 Male, age 74, unknown 21.5
2009 Female, age 91, both hemispheres 20.9
2059 Female, age 85, both hemispheres 17.3
2031 Female, age 72, unknown 16.4
2394 Male, age 61, left hemisphere 12.1
2199 Male, age 80, right hemisphere 10.6
2629 Female, age 94, right hemisphere 9.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.5
Samples: 246

Max nTPM: 56.9
Min nTPM: 4.8
Std nTPM: 7.0
Median nTPM: 22.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 56.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 47.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 44.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 39.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 38.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 36.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 35.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 35.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 35.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 35.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.0
Samples: 246

Max nTPM: 44.8
Min nTPM: 4.1
Std nTPM: 6.8
Median nTPM: 19.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 44.8
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 41.9
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 39.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 37.4
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 36.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 34.7
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 33.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 33.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 32.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 32.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 32.4
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Brain - Putamen (basal ganglia)
Average nTPM: 22.0
Samples: 205

Max nTPM: 49.8
Min nTPM: 6.0
Std nTPM: 6.8
Median nTPM: 21.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 49.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 40.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 38.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 38.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 37.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 37.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 36.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 36.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 36.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 35.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 33.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.4
FF:10164-103B2 76 years, female 29.4
Globus pallidus
Scaled Tags Per Million: 16.4
FF:10175-103C4 60 years, female 21.3
FF:10161-103A8 76 years, female 11.5
Nucleus accumbens
Scaled Tags Per Million: 48.6
FF:10037-101F1 23-56 years, mixed 48.6
Putamen
Scaled Tags Per Million: 47.8
FF:10176-103C5 60 years, female 47.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.