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CAMLG
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:71.0 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:29.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.1
1870 Female, age 42, unknown 50.7
1827 Male, age 72, unknown 50.6
2219 Male, age 76, both hemispheres 50.3
2586 Male, age 75, left hemisphere 50.0
2411 Female, age 72, unknown 49.9
2019 Male, age 18, unknown 49.5
2828 Female, age 72, unknown 48.0
2666 Male, age 74, left hemisphere 47.8
1833 Male, age 53, unknown 47.5
1830 Male, age 51, unknown 47.0
Dorsal raphe nucleus
nTPM: 52.0
2298 Female, age 72, unknown 56.5
2047 Male, age 72, unknown 52.3
2750 Male, age 76, both hemispheres 51.2
1828 Male, age 53, unknown 51.1
2016 Female, age 72, unknown 48.8
Inferior colliculus
nTPM: 49.7
2097 Female, age 72, unknown 54.0
1890 Male, age 53, unknown 49.5
1848 Female, age 42, unknown 48.5
2849 Male, age 72, unknown 46.8
Median raphe nucleus
nTPM: 52.0
2220 Male, age 76, midline 52.0
Pedunculopontine tegmental nucleus
nTPM: 49.8
1921 Female, age 85, both hemispheres 51.4
2334 Male, age 80, both hemispheres 50.5
2338 Male, age 61, both hemispheres 47.5
Periaquaductal grey, anterior
nTPM: 49.8
1795 Male, age 51, unknown 49.9
2502 Female, age 75, unknown 49.8
1947 Male, age 18, unknown 49.7
Periaquaductal grey, dorsal
nTPM: 48.1
1840 Male, age 53, unknown 49.9
2464 Female, age 72, unknown 47.9
1831 Male, age 72, unknown 47.5
2850 Male, age 76, both hemispheres 47.1
Periaquaductal grey, lateral
nTPM: 47.7
2053 Male, age 18, unknown 48.8
2272 Male, age 74, both hemispheres 48.3
2140 Male, age 76, both hemispheres 46.0
Pretectal area
nTPM: 50.7
1816 Male, age 51, unknown 53.6
1944 Female, age 72, unknown 52.8
2224 Female, age 72, unknown 52.1
2007 Male, age 72, unknown 51.8
1817 Female, age 42, unknown 51.7
1815 Male, age 53, unknown 51.1
2273 Male, age 74, both hemispheres 49.8
2667 Female, age 75, unknown 49.8
2407 Male, age 75, both hemispheres 48.6
2825 Male, age 18, unknown 48.4
2316 Male, age 76, right hemisphere 47.8
Red nucleus
nTPM: 48.4
1821 Female, age 72, unknown 52.9
2725 Female, age 75, unknown 49.3
2584 Male, age 75, left hemisphere 49.2
1954 Female, age 42, unknown 48.3
2503 Female, age 72, unknown 48.3
2588 Male, age 74, left hemisphere 48.1
2785 Male, age 18, unknown 48.0
2769 Male, age 72, unknown 47.8
1865 Male, age 51, unknown 47.6
1904 Male, age 53, unknown 47.3
2227 Male, age 72, unknown 47.2
2823 Male, age 76, right hemisphere 46.4
Substantia nigra
nTPM: 53.8
2241 Male, age 72, unknown 64.0
1916 Female, age 42, unknown 59.3
1851 Male, age 51, unknown 56.4
1889 Female, age 72, unknown 53.7
1941 Male, age 53, unknown 53.2
2699 Male, age 18, unknown 51.5
2409 Female, age 72, unknown 50.5
2665 Male, age 74, both hemispheres 50.1
2590 Female, age 75, unknown 50.0
2583 Male, age 75, right hemisphere 49.8
Superior colliculus
nTPM: 49.4
2668 Female, age 75, unknown 51.8
2261 Male, age 18, unknown 51.4
1796 Male, age 53, unknown 51.0
2087 Female, age 72, unknown 50.1
1895 Male, age 76, right hemisphere 49.5
2587 Male, age 74, left hemisphere 49.4
2664 Male, age 75, both hemispheres 48.5
1839 Male, age 51, unknown 48.3
1913 Female, age 42, unknown 47.7
1995 Male, age 72, unknown 46.5
Ventral tegmental area
nTPM: 51.9
1915 Female, age 42, unknown 53.7
2410 Female, age 72, unknown 52.7
1942 Male, age 51, unknown 51.4
2223 Female, age 72, unknown 51.3
2218 Male, age 76, both hemispheres 51.2
2021 Male, age 53, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.0
Samples: 139

Max nTPM: 161.7
Min nTPM: 32.0
Std nTPM: 26.3
Median nTPM: 65.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 161.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 160.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 148.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 139.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 131.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 130.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 129.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 124.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 122.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 121.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 119.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 18.9
Min nTPM: 15.7
Sample A Female 18.8
Sample B Female 16.8
Sample C Male 18.9
Sample D Male 15.7
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 16.0
Min nTPM: 12.6
Sample B Female 13.6
Sample C Male 16.0
Sample D Male 12.6
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 20.4
Min nTPM: 11.3
Sample A Female 20.4
Sample B Female 13.5
Sample C Male 15.8
Sample D Male 11.3
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.0
Sample A Female 20.2
Sample B Female 14.0
Sample C Male 18.9
Sample D Male 14.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 27.1
Sample A Male 33.4
Sample B Male 28.7
Sample C Female 27.1
Sample D Female 29.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
79568047 Antisense, RP_071204_02_B11, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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