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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA:13.4 nTPM
GTEx:16.3 nTPM
FANTOM5:13.8 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:92.6 nTPM

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.4
Sample id Sample description nTPM
Hippocampus
nTPM: 10.8
2621 Female, age 67, right hemisphere 13.6
1898 Male, age 80, left hemisphere 13.1
2529 Female, age 94, left hemisphere 10.1
2148 Female, age 91, left hemisphere 9.6
1911 Female, age 85, right hemisphere 9.4
1855 Male, age 76, left hemisphere 8.8
Dentate gyrus
nTPM: 11.0
2530 Female, age 94, left hemisphere 18.0
1927 Female, age 91, both hemispheres 12.1
2010 Male, age 76, both hemispheres 10.5
2246 Female, age 85, both hemispheres 9.9
2528 Male, age 74, both hemispheres 9.1
2531 Female, age 67, both hemispheres 6.5
Entorhinal gyrus
nTPM: 12.0
2613 Female, age 94, left hemisphere 17.4
1787 Male, age 76, left hemisphere 13.1
2764 Male, age 80, right hemisphere 12.1
2686 Male, age 75, right hemisphere 11.9
1938 Female, age 85, left hemisphere 10.1
2117 Female, age 91, right hemisphere 7.7
Hippocampus, CA1
nTPM: 10.7
2749 Male, age 80, left hemisphere 15.7
1873 Female, age 85, both hemispheres 11.9
2527 Male, age 74, both hemispheres 10.9
2082 Female, age 91, right hemisphere 7.6
2045 Male, age 76, both hemispheres 7.2
Hippocampus, CA2
nTPM: 13.4
2437 Female, age 94, left hemisphere 21.9
1892 Male, age 76, both hemispheres 19.2
1963 Male, age 80, left hemisphere 12.5
2249 Male, age 74, both hemispheres 10.7
1940 Female, age 85, left hemisphere 8.1
2113 Female, age 91, right hemisphere 7.9
Hippocampus, CA3
nTPM: 11.0
1867 Male, age 76, both hemispheres 16.5
2861 Female, age 67, both hemispheres 11.2
1891 Female, age 85, both hemispheres 11.0
2436 Male, age 74, both hemispheres 10.9
2137 Male, age 80, left hemisphere 10.0
2620 Female, age 94, left hemisphere 6.1
Parahippocampal cortex
nTPM: 11.9
2622 Female, age 67, right hemisphere 15.1
1990 Female, age 91, right hemisphere 14.7
2693 Female, age 94, both hemispheres 13.8
2250 Female, age 67, right hemisphere 13.6
2245 Female, age 91, both hemispheres 12.5
2532 Female, age 72, left hemisphere 11.0
1850 Male, age 80, both hemispheres 10.0
2692 Male, age 74, both hemispheres 9.8
1933 Female, age 85, both hemispheres 9.7
2018 Male, age 76, both hemispheres 9.0
Perirhinal gyrus
nTPM: 11.0
2521 Female, age 94, right hemisphere 14.5
1847 Female, age 91, left hemisphere 12.2
1794 Male, age 80, right hemisphere 10.0
1841 Female, age 85, right hemisphere 10.0
2848 Male, age 76, right hemisphere 8.1
Subiculum
nTPM: 12.5
2438 Female, age 94, left hemisphere 21.2
2619 Male, age 74, both hemispheres 14.6
1901 Male, age 80, both hemispheres 12.2
1977 Female, age 85, both hemispheres 12.0
2729 Female, age 91, right hemisphere 7.6
2042 Male, age 76, both hemispheres 7.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.3
Samples: 197

Max nTPM: 65.6
Min nTPM: 1.3
Std nTPM: 12.3
Median nTPM: 13.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 65.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 60.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 53.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 48.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 46.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 44.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 44.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 42.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 42.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 41.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 40.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.8
FF:10169-103B7 60 years, female 14.6
FF:10153-102I9 76 years, female 12.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.6
Samples: 4

Max nTPM: 34.9
Min nTPM: 6.8
Sample A Female 16.0
Sample B Female 12.8
Sample C Male 34.9
Sample D Male 6.8
Entorhinal cortex
nTPM: 32.5
Samples: 4

Max nTPM: 39.7
Min nTPM: 27.2
Sample A Female 27.2
Sample B Female 39.7
Sample C Male 33.3
Sample D Male 29.8
Subiculum
nTPM: 26.5
Samples: 4

Max nTPM: 38.6
Min nTPM: 18.2
Sample A Female 38.6
Sample B Female 21.8
Sample C Male 27.5
Sample D Male 18.2
Ventral hippocampus
nTPM: 19.3
Samples: 4

Max nTPM: 32.5
Min nTPM: 11.2
Sample A Female 19.2
Sample B Female 14.3
Sample C Male 32.5
Sample D Male 11.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 92.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 92.6
Samples: 4

Max nTPM: 100.1
Min nTPM: 82.1
Sample A Male 100.1
Sample B Male 98.5
Sample C Female 89.8
Sample D Female 82.1
Hippocampal formation
nTPM: 69.6
Samples: 4

Max nTPM: 80.7
Min nTPM: 57.0
Sample A Male 73.0
Sample B Male 67.6
Sample C Female 57.0
Sample D Female 80.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.