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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:18.2 nTPM
FANTOM5:33.5 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:89.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.5
2288 Male, age 75, left hemisphere 11.8
1781 Male, age 74, unknown 11.1
2289 Male, age 61, right hemisphere 9.6
2290 Female, age 72, unknown 9.4
1854 Male, age 80, left hemisphere 9.0
2846 Female, age 79, unknown 8.7
1857 Female, age 85, left hemisphere 8.5
2481 Female, age 94, left hemisphere 7.7
Claustrum
nTPM: 11.8
2568 Male, age 61, both hemispheres 19.0
2284 Female, age 91, both hemispheres 15.5
2645 Female, age 72, unknown 14.1
2491 Male, age 75, both hemispheres 13.6
2198 Male, age 80, both hemispheres 11.1
2392 Female, age 94, both hemispheres 10.5
1956 Male, age 74, unknown 8.1
2196 Female, age 79, unknown 7.3
2292 Female, age 85, both hemispheres 7.1
Globus pallidus, externus
nTPM: 9.9
2772 Female, age 79, unknown 15.9
2567 Female, age 72, unknown 10.3
1996 Male, age 80, right hemisphere 9.3
2646 Male, age 61, right hemisphere 8.3
2395 Male, age 75, both hemispheres 5.8
Globus pallidus, internus
nTPM: 8.5
1818 Male, age 74, unknown 12.9
2037 Male, age 80, right hemisphere 11.8
2566 Female, age 72, unknown 9.2
2111 Female, age 85, right hemisphere 7.0
2483 Female, age 94, right hemisphere 6.8
2287 Male, age 75, right hemisphere 5.8
2778 Female, age 91, both hemispheres 5.7
Nucleus accumbens
nTPM: 8.8
2286 Male, age 75, left hemisphere 11.4
1856 Female, age 91, right hemisphere 11.1
2824 Male, age 61, right hemisphere 10.6
1783 Male, age 74, unknown 9.3
1806 Female, age 85, left hemisphere 8.6
2698 Female, age 72, unknown 6.9
2732 Male, age 80, right hemisphere 6.9
2391 Female, age 94, left hemisphere 5.6
Nucleus basalis of Meynert
nTPM: 7.9
2484 Female, age 94, left hemisphere 8.8
2821 Male, age 75, both hemispheres 8.5
2393 Male, age 80, right hemisphere 8.0
2569 Male, age 61, both hemispheres 6.4
Nucleus of the diagonal band
nTPM: 10.1
2029 Male, age 61, right hemisphere 12.2
2195 Female, age 85, both hemispheres 10.7
2775 Male, age 80, right hemisphere 9.7
1812 Female, age 91, both hemispheres 9.3
1979 Male, age 74, unknown 8.5
Olfactory tubercle
nTPM: 12.8
2856 Male, age 75, right hemisphere 16.9
1998 Female, age 91, both hemispheres 13.4
2487 Female, age 94, left hemisphere 12.6
1846 Male, age 80, right hemisphere 8.2
Putamen
nTPM: 9.4
2466 Female, age 79, unknown 10.4
2489 Female, age 72, unknown 10.3
2647 Male, age 75, left hemisphere 9.7
1937 Female, age 91, right hemisphere 9.6
1838 Male, age 80, right hemisphere 9.3
1829 Male, age 74, unknown 9.1
2482 Female, age 94, left hemisphere 7.6
Septal nuclei
nTPM: 10.5
2394 Male, age 61, left hemisphere 15.7
2629 Female, age 94, right hemisphere 11.7
1960 Male, age 74, unknown 9.9
2199 Male, age 80, right hemisphere 9.7
2009 Female, age 91, both hemispheres 9.6
2059 Female, age 85, both hemispheres 9.2
2031 Female, age 72, unknown 8.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.9
Samples: 246

Max nTPM: 38.3
Min nTPM: 2.5
Std nTPM: 7.1
Median nTPM: 16.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 38.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 36.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 33.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 31.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 31.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 31.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 30.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 29.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 29.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 28.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.2
Samples: 246

Max nTPM: 49.8
Min nTPM: 1.9
Std nTPM: 7.9
Median nTPM: 17.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 49.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 42.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 42.4
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 36.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 35.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 35.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 33.7
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 33.7
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 33.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 33.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 31.9
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Brain - Putamen (basal ganglia)
Average nTPM: 16.5
Samples: 205

Max nTPM: 40.7
Min nTPM: 2.3
Std nTPM: 7.7
Median nTPM: 16.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 40.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 32.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 32.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 31.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 31.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 31.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 30.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 30.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 30.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 29.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 29.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.7
FF:10164-103B2 76 years, female 29.7
Globus pallidus
Scaled Tags Per Million: 13.9
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 10.4
Nucleus accumbens
Scaled Tags Per Million: 32.8
FF:10037-101F1 23-56 years, mixed 32.8
Putamen
Scaled Tags Per Million: 33.5
FF:10176-103C5 60 years, female 33.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Caudate
nTPM: 17.5
Samples: 4

Max nTPM: 22.6
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 18.2
Sample C Male 22.6
Sample D Male 18.6
Putamen
nTPM: 24.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 17.4
Sample A Female 24.8
Sample B Female 17.4
Sample C Male 32.4
Sample D Male 24.7
Septum
nTPM: 17.7
Samples: 4

Max nTPM: 28.1
Min nTPM: 11.9
Sample A Female 15.8
Sample B Female 15.0
Sample C Male 28.1
Sample D Male 11.9
Ventral pallidum
nTPM: 23.4
Samples: 4

Max nTPM: 50.0
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 20.3
Sample C Male 50.0
Sample D Male 12.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 89.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.6
Samples: 4

Max nTPM: 76.8
Min nTPM: 56.3
Sample A Male 65.4
Sample B Male 76.8
Sample C Female 59.7
Sample D Female 56.3
Septum
nTPM: 68.4
Samples: 4

Max nTPM: 76.0
Min nTPM: 60.0
Sample A Male 76.0
Sample B Male 70.2
Sample C Female 67.2
Sample D Female 60.0
Ventral forebrain
nTPM: 89.2
Samples: 4

Max nTPM: 98.9
Min nTPM: 79.3
Sample A Male 93.7
Sample B Male 79.3
Sample C Female 98.9
Sample D Female 84.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.