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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:64.7 nTPM
HPA:64.7 nTPM
GTEx:129.7 nTPM
FANTOM5:227.3 Scaled Tags Per Million
Pig:106.5 nTPM
Mouse:200.2 nTPM
Allen mouse:20.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018156Antibody HPA048998Antibody CAB000457
Glial cells MediumNot detectedNot detected
Neuronal cells MediumHighNot detected







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.7
Sample id Sample description nTPM
Hippocampus
nTPM: 62.4
1855 Male, age 76, left hemisphere 79.2
1898 Male, age 80, left hemisphere 69.3
2621 Female, age 67, right hemisphere 64.5
2529 Female, age 94, left hemisphere 56.2
2148 Female, age 91, left hemisphere 54.9
1911 Female, age 85, right hemisphere 50.2
Dentate gyrus
nTPM: 62.9
2010 Male, age 76, both hemispheres 77.8
2530 Female, age 94, left hemisphere 67.5
1927 Female, age 91, both hemispheres 63.4
2528 Male, age 74, both hemispheres 58.2
2246 Female, age 85, both hemispheres 56.6
2531 Female, age 67, both hemispheres 53.9
Entorhinal gyrus
nTPM: 60.6
1787 Male, age 76, left hemisphere 70.0
2117 Female, age 91, right hemisphere 69.0
2613 Female, age 94, left hemisphere 67.1
2764 Male, age 80, right hemisphere 58.0
1938 Female, age 85, left hemisphere 55.1
2686 Male, age 75, right hemisphere 44.2
Hippocampus, CA1
nTPM: 63.7
2045 Male, age 76, both hemispheres 79.8
2749 Male, age 80, left hemisphere 68.6
2082 Female, age 91, right hemisphere 60.2
1873 Female, age 85, both hemispheres 59.5
2527 Male, age 74, both hemispheres 50.5
Hippocampus, CA2
nTPM: 64.7
1892 Male, age 76, both hemispheres 82.1
1940 Female, age 85, left hemisphere 71.1
2113 Female, age 91, right hemisphere 62.3
1963 Male, age 80, left hemisphere 62.2
2437 Female, age 94, left hemisphere 58.1
2249 Male, age 74, both hemispheres 52.5
Hippocampus, CA3
nTPM: 60.9
1867 Male, age 76, both hemispheres 84.8
2620 Female, age 94, left hemisphere 60.8
2137 Male, age 80, left hemisphere 59.8
2436 Male, age 74, both hemispheres 54.4
2861 Female, age 67, both hemispheres 53.1
1891 Female, age 85, both hemispheres 52.8
Parahippocampal cortex
nTPM: 57.3
2250 Female, age 67, right hemisphere 72.2
2018 Male, age 76, both hemispheres 71.0
1850 Male, age 80, both hemispheres 57.4
1990 Female, age 91, right hemisphere 57.4
2532 Female, age 72, left hemisphere 57.3
2245 Female, age 91, both hemispheres 54.4
2693 Female, age 94, both hemispheres 54.3
1933 Female, age 85, both hemispheres 53.8
2692 Male, age 74, both hemispheres 49.4
2622 Female, age 67, right hemisphere 45.8
Perirhinal gyrus
nTPM: 63.5
1847 Female, age 91, left hemisphere 66.7
1794 Male, age 80, right hemisphere 64.6
1841 Female, age 85, right hemisphere 63.2
2848 Male, age 76, right hemisphere 62.6
2521 Female, age 94, right hemisphere 60.2
Subiculum
nTPM: 60.8
2042 Male, age 76, both hemispheres 73.0
2729 Female, age 91, right hemisphere 69.5
1901 Male, age 80, both hemispheres 57.8
1977 Female, age 85, both hemispheres 56.2
2619 Male, age 74, both hemispheres 54.9
2438 Female, age 94, left hemisphere 53.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 129.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 129.7
Samples: 197

Max nTPM: 368.0
Min nTPM: 41.2
Std nTPM: 53.7
Median nTPM: 115.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 368.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 348.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 335.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 289.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 283.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 273.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 271.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 270.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 262.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 245.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 219.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 227.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 227.3
FF:10169-103B7 60 years, female 254.2
FF:10153-102I9 76 years, female 200.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 106.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 106.5
Samples: 4

Max nTPM: 140.3
Min nTPM: 81.6
Sample A Female 140.3
Sample B Female 107.8
Sample C Male 96.3
Sample D Male 81.6
Entorhinal cortex
nTPM: 99.1
Samples: 4

Max nTPM: 111.6
Min nTPM: 78.9
Sample A Female 111.6
Sample B Female 101.0
Sample C Male 105.0
Sample D Male 78.9
Subiculum
nTPM: 88.5
Samples: 4

Max nTPM: 113.2
Min nTPM: 73.1
Sample A Female 113.2
Sample B Female 73.1
Sample C Male 85.0
Sample D Male 82.7
Ventral hippocampus
nTPM: 90.5
Samples: 4

Max nTPM: 116.4
Min nTPM: 59.5
Sample A Female 86.3
Sample B Female 59.5
Sample C Male 116.4
Sample D Male 99.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 200.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 199.6
Samples: 4

Max nTPM: 204.0
Min nTPM: 195.0
Sample A Male 202.3
Sample B Male 204.0
Sample C Female 197.2
Sample D Female 195.0
Hippocampal formation
nTPM: 200.2
Samples: 4

Max nTPM: 209.0
Min nTPM: 194.6
Sample A Male 200.3
Sample B Male 194.6
Sample C Female 209.0
Sample D Female 196.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 20.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.9
67779877 Antisense, RP_040922_01_E10, Mouse strain C57BL/6J (56 days, male) 26.4
71608217 Antisense, RP_050927_01_C01, Mouse strain C57BL/6J (56 days, male) 15.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.