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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:90.8 nTPM
HPA:90.8 nTPM
GTEx:174.6 nTPM
FANTOM5:323.9 Scaled Tags Per Million
Pig:150.3 nTPM
Mouse:256.7 nTPM
Allen mouse:21.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.8
2666 Male, age 74, left hemisphere 69.8
2586 Male, age 75, left hemisphere 66.2
1833 Male, age 53, unknown 64.9
1870 Female, age 42, unknown 64.5
2828 Female, age 72, unknown 64.5
2411 Female, age 72, unknown 63.4
1830 Male, age 51, unknown 62.9
2019 Male, age 18, unknown 62.9
1827 Male, age 72, unknown 60.3
2219 Male, age 76, both hemispheres 48.8
Dorsal raphe nucleus
nTPM: 72.4
2298 Female, age 72, unknown 86.5
2016 Female, age 72, unknown 73.6
2047 Male, age 72, unknown 73.2
1828 Male, age 53, unknown 69.2
2750 Male, age 76, both hemispheres 59.4
Inferior colliculus
nTPM: 70.3
1890 Male, age 53, unknown 74.7
2097 Female, age 72, unknown 73.5
1848 Female, age 42, unknown 70.4
2849 Male, age 72, unknown 62.6
Median raphe nucleus
nTPM: 62.9
2220 Male, age 76, midline 62.9
Pedunculopontine tegmental nucleus
nTPM: 90.8
2338 Male, age 61, both hemispheres 152.5
2334 Male, age 80, both hemispheres 64.3
1921 Female, age 85, both hemispheres 55.7
Periaquaductal grey, anterior
nTPM: 70.8
1947 Male, age 18, unknown 81.0
1795 Male, age 51, unknown 70.9
2502 Female, age 75, unknown 60.4
Periaquaductal grey, dorsal
nTPM: 66.6
1831 Male, age 72, unknown 71.7
1840 Male, age 53, unknown 68.1
2850 Male, age 76, both hemispheres 65.9
2464 Female, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 71.8
2272 Male, age 74, both hemispheres 84.2
2140 Male, age 76, both hemispheres 68.3
2053 Male, age 18, unknown 63.0
Pretectal area
nTPM: 67.5
2407 Male, age 75, both hemispheres 91.6
2273 Male, age 74, both hemispheres 81.7
2224 Female, age 72, unknown 74.2
2825 Male, age 18, unknown 65.4
1817 Female, age 42, unknown 64.6
1944 Female, age 72, unknown 63.6
2667 Female, age 75, unknown 62.3
1816 Male, age 51, unknown 61.4
2316 Male, age 76, right hemisphere 60.9
2007 Male, age 72, unknown 60.2
1815 Male, age 53, unknown 57.0
Red nucleus
nTPM: 64.4
2584 Male, age 75, left hemisphere 76.4
2725 Female, age 75, unknown 72.2
2227 Male, age 72, unknown 70.4
1954 Female, age 42, unknown 69.6
2785 Male, age 18, unknown 69.0
2769 Male, age 72, unknown 68.5
1904 Male, age 53, unknown 64.3
1865 Male, age 51, unknown 62.7
1821 Female, age 72, unknown 60.8
2503 Female, age 72, unknown 59.6
2823 Male, age 76, right hemisphere 53.3
2588 Male, age 74, left hemisphere 46.3
Substantia nigra
nTPM: 82.0
1916 Female, age 42, unknown 101.8
2590 Female, age 75, unknown 101.7
2583 Male, age 75, right hemisphere 92.8
1851 Male, age 51, unknown 86.3
1941 Male, age 53, unknown 79.4
2665 Male, age 74, both hemispheres 79.4
2699 Male, age 18, unknown 75.9
2241 Male, age 72, unknown 72.7
1889 Female, age 72, unknown 66.9
2409 Female, age 72, unknown 63.1
Superior colliculus
nTPM: 65.9
2664 Male, age 75, both hemispheres 80.3
2587 Male, age 74, left hemisphere 73.3
1995 Male, age 72, unknown 71.9
2087 Female, age 72, unknown 70.2
1796 Male, age 53, unknown 67.5
2261 Male, age 18, unknown 64.0
1839 Male, age 51, unknown 62.9
1913 Female, age 42, unknown 62.5
2668 Female, age 75, unknown 57.7
1895 Male, age 76, right hemisphere 48.6
Ventral tegmental area
nTPM: 79.2
1915 Female, age 42, unknown 89.2
1942 Male, age 51, unknown 83.8
2021 Male, age 53, unknown 83.0
2410 Female, age 72, unknown 74.1
2223 Female, age 72, unknown 73.6
2218 Male, age 76, both hemispheres 71.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.6
Samples: 139

Max nTPM: 547.6
Min nTPM: 47.1
Std nTPM: 79.8
Median nTPM: 155.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 547.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 461.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 380.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 366.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 365.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 343.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 333.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 331.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 324.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 316.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 304.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 323.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 323.9
FF:10158-103A5 76 years, female 323.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 150.3
Pig sample Sample description nTPM
Midbrain
nTPM: 122.3
Samples: 4

Max nTPM: 174.1
Min nTPM: 82.3
Sample A Female 134.5
Sample B Female 82.3
Sample C Male 174.1
Sample D Male 98.2
Periaqueductal gray
nTPM: 76.2
Samples: 3

Max nTPM: 85.6
Min nTPM: 67.4
Sample B Female 75.5
Sample C Male 85.6
Sample D Male 67.4
Substantia nigra
nTPM: 123.1
Samples: 4

Max nTPM: 140.4
Min nTPM: 101.1
Sample A Female 140.4
Sample B Female 125.1
Sample C Male 125.9
Sample D Male 101.1
Superior colliculi
nTPM: 150.3
Samples: 4

Max nTPM: 165.4
Min nTPM: 124.4
Sample A Female 147.8
Sample B Female 165.4
Sample C Male 163.7
Sample D Male 124.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 256.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 256.8
Samples: 4

Max nTPM: 258.3
Min nTPM: 254.7
Sample A Male 254.7
Sample B Male 258.3
Sample C Female 257.7
Sample D Female 256.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.0
67779877 Antisense, RP_040922_01_E10, Mouse strain C57BL/6J (56 days, male) 26.0
71608217 Antisense, RP_050927_01_C01, Mouse strain C57BL/6J (56 days, male) 15.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.