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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.3 nTPM
HPA:69.3 nTPM
GTEx:73.9 nTPM
FANTOM5:261.6 Scaled Tags Per Million
Pig:93.0 nTPM
Mouse:85.3 nTPM
Allen mouse:18.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.2
1870 Female, age 42, unknown 70.9
2411 Female, age 72, unknown 67.6
1827 Male, age 72, unknown 64.2
1830 Male, age 51, unknown 62.2
1833 Male, age 53, unknown 62.0
2219 Male, age 76, both hemispheres 61.5
2666 Male, age 74, left hemisphere 59.5
2828 Female, age 72, unknown 58.3
2586 Male, age 75, left hemisphere 54.1
2019 Male, age 18, unknown 52.1
Dorsal raphe nucleus
nTPM: 61.5
2750 Male, age 76, both hemispheres 66.7
2016 Female, age 72, unknown 63.0
1828 Male, age 53, unknown 61.5
2298 Female, age 72, unknown 60.3
2047 Male, age 72, unknown 55.9
Inferior colliculus
nTPM: 62.3
2097 Female, age 72, unknown 64.2
2849 Male, age 72, unknown 63.2
1848 Female, age 42, unknown 62.8
1890 Male, age 53, unknown 59.1
Median raphe nucleus
nTPM: 61.2
2220 Male, age 76, midline 61.2
Pedunculopontine tegmental nucleus
nTPM: 63.9
1921 Female, age 85, both hemispheres 65.2
2334 Male, age 80, both hemispheres 65.1
2338 Male, age 61, both hemispheres 61.4
Periaquaductal grey, anterior
nTPM: 69.3
1947 Male, age 18, unknown 79.9
2502 Female, age 75, unknown 65.0
1795 Male, age 51, unknown 62.9
Periaquaductal grey, dorsal
nTPM: 62.3
1831 Male, age 72, unknown 63.9
1840 Male, age 53, unknown 63.9
2850 Male, age 76, both hemispheres 62.2
2464 Female, age 72, unknown 59.2
Periaquaductal grey, lateral
nTPM: 59.6
2053 Male, age 18, unknown 64.5
2140 Male, age 76, both hemispheres 59.5
2272 Male, age 74, both hemispheres 54.8
Pretectal area
nTPM: 60.2
2825 Male, age 18, unknown 66.5
2224 Female, age 72, unknown 65.6
2316 Male, age 76, right hemisphere 63.5
2667 Female, age 75, unknown 63.0
2273 Male, age 74, both hemispheres 62.2
1815 Male, age 53, unknown 59.1
2407 Male, age 75, both hemispheres 58.9
1816 Male, age 51, unknown 58.2
1817 Female, age 42, unknown 56.1
1944 Female, age 72, unknown 56.1
2007 Male, age 72, unknown 52.7
Red nucleus
nTPM: 64.3
1821 Female, age 72, unknown 75.4
2503 Female, age 72, unknown 73.3
1954 Female, age 42, unknown 67.6
1865 Male, age 51, unknown 65.6
1904 Male, age 53, unknown 65.3
2227 Male, age 72, unknown 65.2
2769 Male, age 72, unknown 64.8
2725 Female, age 75, unknown 63.0
2823 Male, age 76, right hemisphere 61.2
2588 Male, age 74, left hemisphere 58.5
2584 Male, age 75, left hemisphere 56.8
2785 Male, age 18, unknown 55.2
Substantia nigra
nTPM: 63.2
2241 Male, age 72, unknown 69.1
1916 Female, age 42, unknown 66.7
1851 Male, age 51, unknown 65.8
1941 Male, age 53, unknown 65.6
2699 Male, age 18, unknown 64.9
2409 Female, age 72, unknown 61.6
2665 Male, age 74, both hemispheres 61.4
1889 Female, age 72, unknown 60.2
2590 Female, age 75, unknown 59.7
2583 Male, age 75, right hemisphere 56.6
Superior colliculus
nTPM: 62.4
1913 Female, age 42, unknown 70.1
2668 Female, age 75, unknown 67.1
2587 Male, age 74, left hemisphere 66.2
1839 Male, age 51, unknown 65.1
1995 Male, age 72, unknown 63.2
1895 Male, age 76, right hemisphere 62.5
1796 Male, age 53, unknown 61.2
2261 Male, age 18, unknown 59.3
2664 Male, age 75, both hemispheres 55.4
2087 Female, age 72, unknown 54.2
Ventral tegmental area
nTPM: 65.2
2223 Female, age 72, unknown 66.8
2410 Female, age 72, unknown 66.3
1915 Female, age 42, unknown 65.3
2218 Male, age 76, both hemispheres 64.6
1942 Male, age 51, unknown 64.2
2021 Male, age 53, unknown 63.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.9
Samples: 139

Max nTPM: 135.0
Min nTPM: 43.5
Std nTPM: 17.3
Median nTPM: 69.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 135.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 131.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 127.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 120.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 118.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 116.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 116.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 112.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 111.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 103.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 261.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 261.6
FF:10158-103A5 76 years, female 261.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.0
Pig sample Sample description nTPM
Midbrain
nTPM: 92.1
Samples: 4

Max nTPM: 101.5
Min nTPM: 80.4
Sample A Female 97.7
Sample B Female 80.4
Sample C Male 101.5
Sample D Male 88.9
Periaqueductal gray
nTPM: 67.9
Samples: 3

Max nTPM: 71.5
Min nTPM: 62.4
Sample B Female 71.5
Sample C Male 69.7
Sample D Male 62.4
Substantia nigra
nTPM: 70.3
Samples: 4

Max nTPM: 76.7
Min nTPM: 64.6
Sample A Female 76.7
Sample B Female 64.6
Sample C Male 72.3
Sample D Male 67.4
Superior colliculi
nTPM: 93.0
Samples: 4

Max nTPM: 96.4
Min nTPM: 90.6
Sample A Female 91.0
Sample B Female 94.1
Sample C Male 96.4
Sample D Male 90.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.3
Samples: 4

Max nTPM: 87.1
Min nTPM: 83.5
Sample A Male 83.5
Sample B Male 87.1
Sample C Female 86.3
Sample D Female 84.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.1
69817898 Antisense, RP_050510_03_H12, Mouse strain C57BL/6J (56 days, male) 18.1

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