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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA:9.0 nTPM
GTEx:11.0 nTPM
FANTOM5:46.9 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:40.5 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.9
2019 Male, age 18, unknown 10.5
2586 Male, age 75, left hemisphere 10.0
1827 Male, age 72, unknown 9.4
2219 Male, age 76, both hemispheres 9.3
1833 Male, age 53, unknown 8.7
1870 Female, age 42, unknown 8.7
1830 Male, age 51, unknown 8.4
2411 Female, age 72, unknown 8.2
2828 Female, age 72, unknown 8.0
2666 Male, age 74, left hemisphere 7.7
Dorsal raphe nucleus
nTPM: 7.8
2750 Male, age 76, both hemispheres 8.4
2016 Female, age 72, unknown 8.1
2298 Female, age 72, unknown 7.9
1828 Male, age 53, unknown 7.4
2047 Male, age 72, unknown 7.4
Inferior colliculus
nTPM: 9.0
2097 Female, age 72, unknown 9.6
2849 Male, age 72, unknown 9.2
1848 Female, age 42, unknown 8.8
1890 Male, age 53, unknown 8.5
Median raphe nucleus
nTPM: 8.2
2220 Male, age 76, midline 8.2
Pedunculopontine tegmental nucleus
nTPM: 7.7
1921 Female, age 85, both hemispheres 8.3
2334 Male, age 80, both hemispheres 8.0
2338 Male, age 61, both hemispheres 6.9
Periaquaductal grey, anterior
nTPM: 8.3
2502 Female, age 75, unknown 9.6
1795 Male, age 51, unknown 7.9
1947 Male, age 18, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 8.1
2464 Female, age 72, unknown 8.5
1831 Male, age 72, unknown 8.4
1840 Male, age 53, unknown 8.2
2850 Male, age 76, both hemispheres 7.4
Periaquaductal grey, lateral
nTPM: 8.6
2053 Male, age 18, unknown 8.9
2272 Male, age 74, both hemispheres 8.7
2140 Male, age 76, both hemispheres 8.1
Pretectal area
nTPM: 9.0
2007 Male, age 72, unknown 10.1
1816 Male, age 51, unknown 9.9
1815 Male, age 53, unknown 9.6
1944 Female, age 72, unknown 9.5
2273 Male, age 74, both hemispheres 9.5
1817 Female, age 42, unknown 9.0
2316 Male, age 76, right hemisphere 8.7
2407 Male, age 75, both hemispheres 8.7
2224 Female, age 72, unknown 8.6
2825 Male, age 18, unknown 8.0
2667 Female, age 75, unknown 7.7
Red nucleus
nTPM: 8.5
2227 Male, age 72, unknown 9.1
2785 Male, age 18, unknown 9.1
1954 Female, age 42, unknown 9.0
1821 Female, age 72, unknown 8.8
1904 Male, age 53, unknown 8.8
2503 Female, age 72, unknown 8.7
1865 Male, age 51, unknown 8.5
2823 Male, age 76, right hemisphere 8.5
2769 Male, age 72, unknown 8.3
2588 Male, age 74, left hemisphere 8.0
2584 Male, age 75, left hemisphere 7.8
2725 Female, age 75, unknown 7.3
Substantia nigra
nTPM: 7.8
1889 Female, age 72, unknown 8.5
2583 Male, age 75, right hemisphere 8.4
1941 Male, age 53, unknown 8.3
2409 Female, age 72, unknown 8.3
2590 Female, age 75, unknown 8.3
2665 Male, age 74, both hemispheres 8.3
1851 Male, age 51, unknown 7.5
1916 Female, age 42, unknown 7.1
2699 Male, age 18, unknown 7.1
2241 Male, age 72, unknown 6.1
Superior colliculus
nTPM: 8.9
2664 Male, age 75, both hemispheres 10.0
2668 Female, age 75, unknown 9.6
2087 Female, age 72, unknown 9.3
1995 Male, age 72, unknown 9.1
2261 Male, age 18, unknown 9.1
1839 Male, age 51, unknown 9.0
1913 Female, age 42, unknown 8.6
2587 Male, age 74, left hemisphere 8.4
1895 Male, age 76, right hemisphere 8.2
1796 Male, age 53, unknown 8.1
Ventral tegmental area
nTPM: 7.9
2223 Female, age 72, unknown 8.6
2021 Male, age 53, unknown 8.2
1942 Male, age 51, unknown 8.1
2410 Female, age 72, unknown 7.5
1915 Female, age 42, unknown 7.4
2218 Male, age 76, both hemispheres 7.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 16.3
Min nTPM: 5.6
Std nTPM: 1.8
Median nTPM: 11.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 16.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 15.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 15.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 14.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 14.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.9
FF:10158-103A5 76 years, female 46.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 40.3
Min nTPM: 35.1
Sample A Female 40.3
Sample B Female 35.1
Sample C Male 35.3
Sample D Male 36.6
Periaqueductal gray
nTPM: 33.6
Samples: 3

Max nTPM: 34.6
Min nTPM: 32.0
Sample B Female 32.0
Sample C Male 34.3
Sample D Male 34.6
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 38.1
Min nTPM: 29.3
Sample A Female 38.1
Sample B Female 29.3
Sample C Male 33.2
Sample D Male 31.6
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 40.3
Min nTPM: 24.4
Sample A Female 36.5
Sample B Female 24.4
Sample C Male 34.8
Sample D Male 40.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 43.2
Min nTPM: 37.2
Sample A Male 39.9
Sample B Male 41.5
Sample C Female 43.2
Sample D Female 37.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
69113578 Antisense, RP_050316_02_D04, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.