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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:36.6 nTPM
FANTOM5:14.6 Scaled Tags Per Million
Pig:13.4 nTPM
Mouse:39.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.4
1827 Male, age 72, unknown 37.5
1870 Female, age 42, unknown 37.2
2828 Female, age 72, unknown 37.2
2411 Female, age 72, unknown 37.1
1833 Male, age 53, unknown 36.4
2019 Male, age 18, unknown 36.2
2586 Male, age 75, left hemisphere 36.2
1830 Male, age 51, unknown 35.8
2666 Male, age 74, left hemisphere 35.7
2219 Male, age 76, both hemispheres 34.4
Dorsal raphe nucleus
nTPM: 36.0
2298 Female, age 72, unknown 36.7
2750 Male, age 76, both hemispheres 36.6
1828 Male, age 53, unknown 35.8
2016 Female, age 72, unknown 35.4
2047 Male, age 72, unknown 35.2
Inferior colliculus
nTPM: 36.0
2097 Female, age 72, unknown 36.4
2849 Male, age 72, unknown 36.1
1890 Male, age 53, unknown 35.7
1848 Female, age 42, unknown 35.6
Median raphe nucleus
nTPM: 35.7
2220 Male, age 76, midline 35.7
Pedunculopontine tegmental nucleus
nTPM: 36.2
2334 Male, age 80, both hemispheres 36.8
1921 Female, age 85, both hemispheres 36.0
2338 Male, age 61, both hemispheres 35.8
Periaquaductal grey, anterior
nTPM: 36.1
2502 Female, age 75, unknown 36.9
1795 Male, age 51, unknown 35.9
1947 Male, age 18, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 36.0
2464 Female, age 72, unknown 36.5
1840 Male, age 53, unknown 36.3
1831 Male, age 72, unknown 36.2
2850 Male, age 76, both hemispheres 34.9
Periaquaductal grey, lateral
nTPM: 35.6
2053 Male, age 18, unknown 36.2
2272 Male, age 74, both hemispheres 35.5
2140 Male, age 76, both hemispheres 35.3
Pretectal area
nTPM: 36.3
1815 Male, age 53, unknown 37.1
1944 Female, age 72, unknown 36.8
2825 Male, age 18, unknown 36.8
1816 Male, age 51, unknown 36.6
2007 Male, age 72, unknown 36.6
1817 Female, age 42, unknown 36.4
2667 Female, age 75, unknown 36.4
2407 Male, age 75, both hemispheres 36.1
2224 Female, age 72, unknown 35.9
2316 Male, age 76, right hemisphere 35.9
2273 Male, age 74, both hemispheres 35.2
Red nucleus
nTPM: 37.0
1865 Male, age 51, unknown 38.3
1821 Female, age 72, unknown 37.4
1904 Male, age 53, unknown 37.4
1954 Female, age 42, unknown 37.4
2503 Female, age 72, unknown 37.4
2588 Male, age 74, left hemisphere 37.1
2785 Male, age 18, unknown 37.1
2227 Male, age 72, unknown 36.9
2725 Female, age 75, unknown 36.6
2769 Male, age 72, unknown 36.6
2823 Male, age 76, right hemisphere 36.2
2584 Male, age 75, left hemisphere 35.1
Substantia nigra
nTPM: 36.7
2409 Female, age 72, unknown 38.3
1916 Female, age 42, unknown 37.4
1851 Male, age 51, unknown 37.0
2241 Male, age 72, unknown 37.0
2583 Male, age 75, right hemisphere 36.6
1889 Female, age 72, unknown 36.4
2665 Male, age 74, both hemispheres 36.4
1941 Male, age 53, unknown 36.2
2590 Female, age 75, unknown 35.7
2699 Male, age 18, unknown 35.5
Superior colliculus
nTPM: 36.5
1895 Male, age 76, right hemisphere 37.2
2261 Male, age 18, unknown 37.0
2668 Female, age 75, unknown 37.0
1796 Male, age 53, unknown 36.7
2664 Male, age 75, both hemispheres 36.7
2587 Male, age 74, left hemisphere 36.6
1913 Female, age 42, unknown 36.4
1839 Male, age 51, unknown 36.2
2087 Female, age 72, unknown 35.8
1995 Male, age 72, unknown 35.5
Ventral tegmental area
nTPM: 36.3
2410 Female, age 72, unknown 37.2
1915 Female, age 42, unknown 37.0
2218 Male, age 76, both hemispheres 36.3
2223 Female, age 72, unknown 36.3
1942 Male, age 51, unknown 35.6
2021 Male, age 53, unknown 35.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 93.4
Min nTPM: 20.2
Std nTPM: 9.9
Median nTPM: 35.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 93.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 55.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 52.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 49.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.6
FF:10158-103A5 76 years, female 14.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.4
Pig sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 9.9
Sample A Female 15.7
Sample B Female 13.2
Sample C Male 12.1
Sample D Male 9.9
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 10.3
Min nTPM: 10.1
Sample B Female 10.1
Sample C Male 10.2
Sample D Male 10.3
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 15.4
Min nTPM: 9.5
Sample A Female 15.4
Sample B Female 11.8
Sample C Male 11.3
Sample D Male 9.5
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.1
Sample A Female 14.2
Sample B Female 13.6
Sample C Male 13.6
Sample D Male 12.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 42.8
Min nTPM: 35.8
Sample A Male 42.8
Sample B Male 38.1
Sample C Female 35.8
Sample D Female 40.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
199220 Antisense, RP_040604_02_E12, Mouse strain C57BL/6J (56 days, male) 8.1
77620413 Antisense, RP_070205_01_G07, Mouse strain C57BL/6J (56 days, male) 1.2
77414917 Antisense, RP_070205_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.