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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:37.9 nTPM
HPA:37.9 nTPM
GTEx:37.1 nTPM
FANTOM5:21.3 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:37.4 nTPM
Allen mouse:5.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA067639Antibody CAB004684
Glial cells Not detectedMedium
Neuronal cells Not detected-




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.1
1854 Male, age 80, left hemisphere 36.9
2846 Female, age 79, unknown 36.8
2481 Female, age 94, left hemisphere 36.5
1781 Male, age 74, unknown 36.1
1857 Female, age 85, left hemisphere 36.1
2288 Male, age 75, left hemisphere 35.8
2290 Female, age 72, unknown 35.6
2289 Male, age 61, right hemisphere 34.6
Claustrum
nTPM: 36.0
2198 Male, age 80, both hemispheres 37.3
2196 Female, age 79, unknown 37.1
2491 Male, age 75, both hemispheres 36.7
2284 Female, age 91, both hemispheres 36.3
1956 Male, age 74, unknown 36.0
2292 Female, age 85, both hemispheres 35.6
2392 Female, age 94, both hemispheres 35.6
2568 Male, age 61, both hemispheres 34.7
2645 Female, age 72, unknown 34.5
Globus pallidus, externus
nTPM: 37.8
2395 Male, age 75, both hemispheres 39.1
2772 Female, age 79, unknown 38.6
1996 Male, age 80, right hemisphere 37.8
2646 Male, age 61, right hemisphere 37.4
2567 Female, age 72, unknown 36.0
Globus pallidus, internus
nTPM: 37.9
2287 Male, age 75, right hemisphere 39.6
2483 Female, age 94, right hemisphere 39.4
2778 Female, age 91, both hemispheres 38.1
2037 Male, age 80, right hemisphere 37.6
2111 Female, age 85, right hemisphere 37.5
2566 Female, age 72, unknown 36.6
1818 Male, age 74, unknown 36.2
Nucleus accumbens
nTPM: 37.2
2824 Male, age 61, right hemisphere 38.1
1783 Male, age 74, unknown 37.7
2391 Female, age 94, left hemisphere 37.7
1856 Female, age 91, right hemisphere 37.5
2698 Female, age 72, unknown 37.0
1806 Female, age 85, left hemisphere 36.9
2286 Male, age 75, left hemisphere 36.5
2732 Male, age 80, right hemisphere 36.4
Nucleus basalis of Meynert
nTPM: 36.4
2393 Male, age 80, right hemisphere 37.4
2569 Male, age 61, both hemispheres 36.8
2484 Female, age 94, left hemisphere 35.8
2821 Male, age 75, both hemispheres 35.6
Nucleus of the diagonal band
nTPM: 36.1
2775 Male, age 80, right hemisphere 37.2
1812 Female, age 91, both hemispheres 36.5
1979 Male, age 74, unknown 35.7
2195 Female, age 85, both hemispheres 35.5
2029 Male, age 61, right hemisphere 35.4
Olfactory tubercle
nTPM: 35.3
1846 Male, age 80, right hemisphere 37.0
1998 Female, age 91, both hemispheres 36.3
2856 Male, age 75, right hemisphere 34.4
2487 Female, age 94, left hemisphere 33.5
Putamen
nTPM: 36.4
2466 Female, age 79, unknown 37.6
1838 Male, age 80, right hemisphere 37.2
2482 Female, age 94, left hemisphere 37.1
1937 Female, age 91, right hemisphere 36.4
1829 Male, age 74, unknown 35.8
2489 Female, age 72, unknown 35.5
2647 Male, age 75, left hemisphere 35.1
Septal nuclei
nTPM: 35.4
1960 Male, age 74, unknown 36.2
2031 Female, age 72, unknown 36.1
2009 Female, age 91, both hemispheres 35.7
2199 Male, age 80, right hemisphere 35.3
2059 Female, age 85, both hemispheres 35.1
2394 Male, age 61, left hemisphere 34.8
2629 Female, age 94, right hemisphere 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.2
Samples: 246

Max nTPM: 72.8
Min nTPM: 17.4
Std nTPM: 8.6
Median nTPM: 31.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 72.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 68.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 56.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 56.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 55.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 54.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 53.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 49.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 49.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.1
Samples: 246

Max nTPM: 88.2
Min nTPM: 15.6
Std nTPM: 9.2
Median nTPM: 35.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 88.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 75.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 69.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 62.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 59.5
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 57.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 56.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 53.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 53.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 53.5
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 53.2
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Brain - Putamen (basal ganglia)
Average nTPM: 36.3
Samples: 205

Max nTPM: 77.6
Min nTPM: 17.9
Std nTPM: 9.2
Median nTPM: 34.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 77.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 62.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 62.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 61.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 61.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 59.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 55.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 55.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 54.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 54.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 53.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.2
FF:10164-103B2 76 years, female 18.2
Globus pallidus
Scaled Tags Per Million: 18.2
FF:10175-103C4 60 years, female 19.7
FF:10161-103A8 76 years, female 16.8
Nucleus accumbens
Scaled Tags Per Million: 21.0
FF:10037-101F1 23-56 years, mixed 21.0
Putamen
Scaled Tags Per Million: 21.3
FF:10176-103C5 60 years, female 21.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Caudate
nTPM: 8.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 10.5
Sample C Male 9.1
Sample D Male 7.5
Putamen
nTPM: 9.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.3
Sample A Female 10.3
Sample B Female 8.3
Sample C Male 11.2
Sample D Male 9.5
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 9.3
Sample C Male 11.0
Sample D Male 8.5
Ventral pallidum
nTPM: 9.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 10.1
Sample C Male 10.5
Sample D Male 8.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.4
Samples: 4

Max nTPM: 39.1
Min nTPM: 35.6
Sample A Male 37.5
Sample B Male 39.1
Sample C Female 37.4
Sample D Female 35.6
Septum
nTPM: 36.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 33.5
Sample A Male 35.3
Sample B Male 37.0
Sample C Female 39.3
Sample D Female 33.5
Ventral forebrain
nTPM: 36.0
Samples: 4

Max nTPM: 38.4
Min nTPM: 33.4
Sample A Male 37.4
Sample B Male 34.8
Sample C Female 33.4
Sample D Female 38.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
199220 Antisense, RP_040604_02_E12, Mouse strain C57BL/6J (56 days, male) 9.7
77620413 Antisense, RP_070205_01_G07, Mouse strain C57BL/6J (56 days, male) 1.0
77414917 Antisense, RP_070205_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 5.4
199220 Antisense, RP_040604_02_E12, Mouse strain C57BL/6J (56 days, male) 9.6
77620413 Antisense, RP_070205_01_G07, Mouse strain C57BL/6J (56 days, male) 1.2
77414917 Antisense, RP_070205_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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