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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.3 nTPM
HPA:51.3 nTPM
GTEx:28.6 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:105.2 nTPM
Mouse:119.2 nTPM
Allen mouse:22.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.3
Sample id Sample description nTPM
Hippocampus
nTPM: 14.6
1898 Male, age 80, left hemisphere 30.3
1911 Female, age 85, right hemisphere 22.3
2148 Female, age 91, left hemisphere 16.6
2621 Female, age 67, right hemisphere 11.9
1855 Male, age 76, left hemisphere 6.5
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 15.4
1927 Female, age 91, both hemispheres 59.4
2531 Female, age 67, both hemispheres 10.8
2010 Male, age 76, both hemispheres 8.7
2246 Female, age 85, both hemispheres 8.5
2530 Female, age 94, left hemisphere 4.8
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 51.3
2613 Female, age 94, left hemisphere 128.5
1938 Female, age 85, left hemisphere 75.8
2764 Male, age 80, right hemisphere 55.2
1787 Male, age 76, left hemisphere 26.4
2686 Male, age 75, right hemisphere 22.0
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 21.6
2749 Male, age 80, left hemisphere 69.6
1873 Female, age 85, both hemispheres 19.7
2045 Male, age 76, both hemispheres 16.9
2527 Male, age 74, both hemispheres 1.8
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 16.2
1892 Male, age 76, both hemispheres 57.2
1963 Male, age 80, left hemisphere 27.4
2437 Female, age 94, left hemisphere 10.2
2249 Male, age 74, both hemispheres 1.2
2113 Female, age 91, right hemisphere 1.1
1940 Female, age 85, left hemisphere 0.0
Hippocampus, CA3
nTPM: 33.0
2137 Male, age 80, left hemisphere 76.7
1867 Male, age 76, both hemispheres 47.9
1891 Female, age 85, both hemispheres 31.4
2620 Female, age 94, left hemisphere 29.3
2861 Female, age 67, both hemispheres 9.0
2436 Male, age 74, both hemispheres 3.8
Parahippocampal cortex
nTPM: 29.9
1850 Male, age 80, both hemispheres 75.1
1990 Female, age 91, right hemisphere 73.4
2532 Female, age 72, left hemisphere 33.4
1933 Female, age 85, both hemispheres 30.1
2692 Male, age 74, both hemispheres 26.0
2245 Female, age 91, both hemispheres 22.5
2622 Female, age 67, right hemisphere 21.0
2693 Female, age 94, both hemispheres 13.1
2250 Female, age 67, right hemisphere 2.3
2018 Male, age 76, both hemispheres 2.0
Perirhinal gyrus
nTPM: 40.0
1847 Female, age 91, left hemisphere 94.4
1841 Female, age 85, right hemisphere 40.8
1794 Male, age 80, right hemisphere 37.3
2848 Male, age 76, right hemisphere 19.8
2521 Female, age 94, right hemisphere 7.9
Subiculum
nTPM: 23.2
1901 Male, age 80, both hemispheres 49.8
1977 Female, age 85, both hemispheres 44.2
2438 Female, age 94, left hemisphere 23.0
2042 Male, age 76, both hemispheres 17.2
2619 Male, age 74, both hemispheres 4.9
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.6
Samples: 197

Max nTPM: 152.0
Min nTPM: 1.7
Std nTPM: 22.5
Median nTPM: 24.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 152.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 101.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 96.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 95.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 93.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 81.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 77.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 77.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 75.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 75.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 73.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.2
FF:10169-103B7 60 years, female 86.8
FF:10153-102I9 76 years, female 67.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 105.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 105.2
Samples: 4

Max nTPM: 149.9
Min nTPM: 72.2
Sample A Female 110.4
Sample B Female 88.2
Sample C Male 149.9
Sample D Male 72.2
Entorhinal cortex
nTPM: 59.7
Samples: 4

Max nTPM: 73.5
Min nTPM: 42.0
Sample A Female 56.1
Sample B Female 73.5
Sample C Male 42.0
Sample D Male 67.2
Subiculum
nTPM: 48.3
Samples: 4

Max nTPM: 72.0
Min nTPM: 36.7
Sample A Female 72.0
Sample B Female 36.7
Sample C Male 47.5
Sample D Male 37.1
Ventral hippocampus
nTPM: 71.1
Samples: 4

Max nTPM: 158.8
Min nTPM: 34.6
Sample A Female 38.9
Sample B Female 34.6
Sample C Male 52.0
Sample D Male 158.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 119.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 119.2
Samples: 4

Max nTPM: 135.0
Min nTPM: 111.2
Sample A Male 135.0
Sample B Male 117.1
Sample C Female 113.6
Sample D Female 111.2
Hippocampal formation
nTPM: 116.8
Samples: 4

Max nTPM: 124.7
Min nTPM: 109.0
Sample A Male 109.0
Sample B Male 124.7
Sample C Female 121.3
Sample D Female 112.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 22.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.1
100143519 Antisense, RP_110407_01_E03, Mouse strain C57BL/6J (56 days, male) 22.1

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