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CFL2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:98.7 nTPM
HPA:98.7 nTPM
GTEx:58.5 nTPM
FANTOM5:254.0 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:38.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045599
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 98.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 64.8
2288 Male, age 75, left hemisphere 78.8
2481 Female, age 94, left hemisphere 70.9
2846 Female, age 79, unknown 70.5
1854 Male, age 80, left hemisphere 63.1
1781 Male, age 74, unknown 62.1
2290 Female, age 72, unknown 59.6
2289 Male, age 61, right hemisphere 56.6
1857 Female, age 85, left hemisphere 56.5
Claustrum
nTPM: 68.4
1956 Male, age 74, unknown 84.1
2392 Female, age 94, both hemispheres 76.6
2292 Female, age 85, both hemispheres 75.7
2196 Female, age 79, unknown 70.9
2491 Male, age 75, both hemispheres 69.0
2198 Male, age 80, both hemispheres 63.4
2568 Male, age 61, both hemispheres 62.1
2284 Female, age 91, both hemispheres 59.6
2645 Female, age 72, unknown 54.6
Globus pallidus, externus
nTPM: 89.8
1996 Male, age 80, right hemisphere 104.2
2772 Female, age 79, unknown 100.9
2646 Male, age 61, right hemisphere 90.0
2395 Male, age 75, both hemispheres 84.4
2567 Female, age 72, unknown 69.2
Globus pallidus, internus
nTPM: 98.7
2287 Male, age 75, right hemisphere 115.0
2778 Female, age 91, both hemispheres 109.2
2037 Male, age 80, right hemisphere 100.4
2111 Female, age 85, right hemisphere 98.7
1818 Male, age 74, unknown 98.4
2483 Female, age 94, right hemisphere 92.3
2566 Female, age 72, unknown 76.8
Nucleus accumbens
nTPM: 70.3
2391 Female, age 94, left hemisphere 102.5
2286 Male, age 75, left hemisphere 81.1
2698 Female, age 72, unknown 80.5
2732 Male, age 80, right hemisphere 62.6
1806 Female, age 85, left hemisphere 61.9
2824 Male, age 61, right hemisphere 58.8
1783 Male, age 74, unknown 58.7
1856 Female, age 91, right hemisphere 56.1
Nucleus basalis of Meynert
nTPM: 72.0
2569 Male, age 61, both hemispheres 82.7
2821 Male, age 75, both hemispheres 77.0
2484 Female, age 94, left hemisphere 64.9
2393 Male, age 80, right hemisphere 63.6
Nucleus of the diagonal band
nTPM: 52.8
1812 Female, age 91, both hemispheres 59.7
2029 Male, age 61, right hemisphere 52.3
1979 Male, age 74, unknown 51.7
2775 Male, age 80, right hemisphere 50.9
2195 Female, age 85, both hemispheres 49.5
Olfactory tubercle
nTPM: 56.4
2856 Male, age 75, right hemisphere 61.1
1998 Female, age 91, both hemispheres 57.9
1846 Male, age 80, right hemisphere 56.6
2487 Female, age 94, left hemisphere 50.2
Putamen
nTPM: 65.3
1829 Male, age 74, unknown 72.4
2482 Female, age 94, left hemisphere 71.9
1937 Female, age 91, right hemisphere 71.1
2489 Female, age 72, unknown 64.3
2647 Male, age 75, left hemisphere 61.7
2466 Female, age 79, unknown 61.1
1838 Male, age 80, right hemisphere 54.3
Septal nuclei
nTPM: 58.0
2394 Male, age 61, left hemisphere 69.7
2629 Female, age 94, right hemisphere 62.6
2031 Female, age 72, unknown 58.3
2009 Female, age 91, both hemispheres 58.2
2199 Male, age 80, right hemisphere 57.0
2059 Female, age 85, both hemispheres 50.7
1960 Male, age 74, unknown 49.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.0
Samples: 246

Max nTPM: 144.6
Min nTPM: 17.8
Std nTPM: 15.9
Median nTPM: 40.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 144.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 101.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 95.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 94.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 83.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 78.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 78.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 77.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 75.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 75.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.8
Samples: 246

Max nTPM: 212.1
Min nTPM: 8.9
Std nTPM: 20.9
Median nTPM: 28.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 212.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 156.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 132.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 120.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 102.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 80.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 77.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 72.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 71.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 71.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 67.2
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Brain - Putamen (basal ganglia)
Average nTPM: 58.5
Samples: 205

Max nTPM: 205.2
Min nTPM: 24.3
Std nTPM: 22.3
Median nTPM: 55.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 205.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 150.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 130.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 109.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 105.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 101.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 99.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 98.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 96.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 96.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 93.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 254.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.5
FF:10164-103B2 76 years, female 91.5
Globus pallidus
Scaled Tags Per Million: 254.0
FF:10175-103C4 60 years, female 262.0
FF:10161-103A8 76 years, female 246.0
Nucleus accumbens
Scaled Tags Per Million: 167.0
FF:10037-101F1 23-56 years, mixed 167.0
Putamen
Scaled Tags Per Million: 89.2
FF:10176-103C5 60 years, female 89.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Caudate
nTPM: 25.7
Samples: 4

Max nTPM: 27.9
Min nTPM: 23.2
Sample A Female 26.7
Sample B Female 23.2
Sample C Male 27.9
Sample D Male 25.1
Putamen
nTPM: 50.7
Samples: 4

Max nTPM: 68.1
Min nTPM: 34.8
Sample A Female 55.5
Sample B Female 34.8
Sample C Male 68.1
Sample D Male 44.2
Septum
nTPM: 39.9
Samples: 4

Max nTPM: 56.4
Min nTPM: 31.6
Sample A Female 36.1
Sample B Female 31.6
Sample C Male 56.4
Sample D Male 35.3
Ventral pallidum
nTPM: 42.3
Samples: 4

Max nTPM: 55.5
Min nTPM: 29.2
Sample A Female 29.2
Sample B Female 42.3
Sample C Male 55.5
Sample D Male 42.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.7
Samples: 4

Max nTPM: 28.6
Min nTPM: 26.3
Sample A Male 28.6
Sample B Male 26.3
Sample C Female 28.6
Sample D Female 27.1
Septum
nTPM: 38.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 37.4
Sample A Male 37.4
Sample B Male 39.8
Sample C Female 38.9
Sample D Female 37.5
Ventral forebrain
nTPM: 30.6
Samples: 4

Max nTPM: 33.8
Min nTPM: 28.0
Sample A Male 28.0
Sample B Male 30.3
Sample C Female 33.8
Sample D Female 30.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74357607 Antisense, RP_060119_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74357607 Antisense, RP_060119_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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