ABOUTMENU
HELP
NEWS
TTC8
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:11.0 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:10.8 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.2
1854 Male, age 80, left hemisphere 15.5
2288 Male, age 75, left hemisphere 15.1
1857 Female, age 85, left hemisphere 15.0
2481 Female, age 94, left hemisphere 14.4
2290 Female, age 72, unknown 14.1
2846 Female, age 79, unknown 13.6
1781 Male, age 74, unknown 12.8
2289 Male, age 61, right hemisphere 12.8
Claustrum
nTPM: 11.3
2196 Female, age 79, unknown 12.0
2284 Female, age 91, both hemispheres 11.8
2392 Female, age 94, both hemispheres 11.7
1956 Male, age 74, unknown 11.5
2198 Male, age 80, both hemispheres 11.4
2491 Male, age 75, both hemispheres 11.1
2292 Female, age 85, both hemispheres 11.0
2645 Female, age 72, unknown 11.0
2568 Male, age 61, both hemispheres 10.4
Globus pallidus, externus
nTPM: 11.0
2772 Female, age 79, unknown 12.2
2395 Male, age 75, both hemispheres 11.4
1996 Male, age 80, right hemisphere 11.3
2646 Male, age 61, right hemisphere 10.6
2567 Female, age 72, unknown 9.4
Globus pallidus, internus
nTPM: 11.3
2483 Female, age 94, right hemisphere 12.8
2287 Male, age 75, right hemisphere 12.1
2037 Male, age 80, right hemisphere 12.0
1818 Male, age 74, unknown 11.3
2778 Female, age 91, both hemispheres 11.2
2111 Female, age 85, right hemisphere 9.8
2566 Female, age 72, unknown 9.8
Nucleus accumbens
nTPM: 13.9
1856 Female, age 91, right hemisphere 17.0
1806 Female, age 85, left hemisphere 14.4
2698 Female, age 72, unknown 14.3
2286 Male, age 75, left hemisphere 13.7
2824 Male, age 61, right hemisphere 13.7
2732 Male, age 80, right hemisphere 13.1
1783 Male, age 74, unknown 12.9
2391 Female, age 94, left hemisphere 12.3
Nucleus basalis of Meynert
nTPM: 12.1
2393 Male, age 80, right hemisphere 14.0
2821 Male, age 75, both hemispheres 12.4
2484 Female, age 94, left hemisphere 11.7
2569 Male, age 61, both hemispheres 10.3
Nucleus of the diagonal band
nTPM: 14.6
2775 Male, age 80, right hemisphere 15.9
2195 Female, age 85, both hemispheres 15.7
1979 Male, age 74, unknown 14.7
1812 Female, age 91, both hemispheres 14.6
2029 Male, age 61, right hemisphere 12.1
Olfactory tubercle
nTPM: 13.4
1846 Male, age 80, right hemisphere 14.8
2487 Female, age 94, left hemisphere 13.3
1998 Female, age 91, both hemispheres 13.0
2856 Male, age 75, right hemisphere 12.4
Putamen
nTPM: 13.0
1937 Female, age 91, right hemisphere 14.8
1838 Male, age 80, right hemisphere 14.5
2482 Female, age 94, left hemisphere 13.8
2466 Female, age 79, unknown 13.6
1829 Male, age 74, unknown 12.6
2489 Female, age 72, unknown 11.0
2647 Male, age 75, left hemisphere 11.0
Septal nuclei
nTPM: 14.0
2629 Female, age 94, right hemisphere 16.0
1960 Male, age 74, unknown 15.5
2009 Female, age 91, both hemispheres 15.0
2031 Female, age 72, unknown 14.2
2059 Female, age 85, both hemispheres 14.1
2199 Male, age 80, right hemisphere 12.2
2394 Male, age 61, left hemisphere 11.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 19.9
Min nTPM: 2.7
Std nTPM: 3.1
Median nTPM: 9.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 19.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 19.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 18.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 18.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 18.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 17.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 16.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 16.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 16.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 15.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 15.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.0
Samples: 246

Max nTPM: 30.1
Min nTPM: 1.6
Std nTPM: 4.6
Median nTPM: 10.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 30.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 29.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 28.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 26.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 24.0
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 23.9
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 21.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 20.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 19.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 19.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 19.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 9.6
Samples: 205

Max nTPM: 18.4
Min nTPM: 2.2
Std nTPM: 3.0
Median nTPM: 9.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 18.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 17.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 16.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 16.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 16.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 16.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 15.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 15.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 15.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 14.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 14.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.4
FF:10164-103B2 76 years, female 49.4
Globus pallidus
Scaled Tags Per Million: 21.3
FF:10175-103C4 60 years, female 28.4
FF:10161-103A8 76 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 56.0
FF:10037-101F1 23-56 years, mixed 56.0
Putamen
Scaled Tags Per Million: 56.7
FF:10176-103C5 60 years, female 56.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.2
Sample A Female 13.5
Sample B Female 12.6
Sample C Male 15.6
Sample D Male 11.2
Putamen
nTPM: 12.3
Samples: 4

Max nTPM: 18.9
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 10.5
Sample C Male 18.9
Sample D Male 11.1
Septum
nTPM: 11.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.3
Sample A Female 12.9
Sample B Female 11.2
Sample C Male 9.3
Sample D Male 11.0
Ventral pallidum
nTPM: 10.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 6.8
Sample A Female 12.9
Sample B Female 10.6
Sample C Male 6.8
Sample D Male 10.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.8
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.4
Sample A Male 10.7
Sample B Male 11.9
Sample C Female 11.0
Sample D Female 9.4
Septum
nTPM: 10.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.6
Sample A Male 9.8
Sample B Male 9.6
Sample C Female 11.0
Sample D Female 12.1
Ventral forebrain
nTPM: 8.3
Samples: 4

Max nTPM: 10.5
Min nTPM: 5.9
Sample A Male 10.5
Sample B Male 9.5
Sample C Female 5.9
Sample D Female 7.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
634462 Antisense, RP_040914_01_A12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.0
634462 Antisense, RP_040914_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.