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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:8.1 nTPM
HPA:8.1 nTPM
GTEx:7.6 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:23.7 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015716
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 8.1
Sample id Sample description nTPM
Hippocampus
nTPM: 7.5
1898 Male, age 80, left hemisphere 8.7
2529 Female, age 94, left hemisphere 8.2
2148 Female, age 91, left hemisphere 7.3
1911 Female, age 85, right hemisphere 7.1
1855 Male, age 76, left hemisphere 6.8
2621 Female, age 67, right hemisphere 6.7
Dentate gyrus
nTPM: 7.4
2528 Male, age 74, both hemispheres 8.0
2530 Female, age 94, left hemisphere 8.0
1927 Female, age 91, both hemispheres 7.9
2531 Female, age 67, both hemispheres 6.9
2010 Male, age 76, both hemispheres 6.7
2246 Female, age 85, both hemispheres 6.7
Entorhinal gyrus
nTPM: 6.7
2117 Female, age 91, right hemisphere 8.8
1938 Female, age 85, left hemisphere 6.9
2686 Male, age 75, right hemisphere 6.8
2764 Male, age 80, right hemisphere 6.3
1787 Male, age 76, left hemisphere 5.9
2613 Female, age 94, left hemisphere 5.6
Hippocampus, CA1
nTPM: 8.1
2749 Male, age 80, left hemisphere 10.3
2527 Male, age 74, both hemispheres 8.3
1873 Female, age 85, both hemispheres 8.1
2045 Male, age 76, both hemispheres 7.4
2082 Female, age 91, right hemisphere 6.5
Hippocampus, CA2
nTPM: 7.2
1963 Male, age 80, left hemisphere 9.0
2249 Male, age 74, both hemispheres 8.3
1892 Male, age 76, both hemispheres 6.9
2113 Female, age 91, right hemisphere 6.9
2437 Female, age 94, left hemisphere 6.4
1940 Female, age 85, left hemisphere 5.9
Hippocampus, CA3
nTPM: 7.8
2436 Male, age 74, both hemispheres 9.7
2137 Male, age 80, left hemisphere 8.8
1891 Female, age 85, both hemispheres 7.9
2861 Female, age 67, both hemispheres 7.4
1867 Male, age 76, both hemispheres 6.8
2620 Female, age 94, left hemisphere 6.2
Parahippocampal cortex
nTPM: 6.3
2692 Male, age 74, both hemispheres 7.9
1850 Male, age 80, both hemispheres 7.2
2250 Female, age 67, right hemisphere 7.0
1990 Female, age 91, right hemisphere 6.7
2245 Female, age 91, both hemispheres 6.4
1933 Female, age 85, both hemispheres 6.2
2532 Female, age 72, left hemisphere 5.8
2693 Female, age 94, both hemispheres 5.6
2018 Male, age 76, both hemispheres 5.1
2622 Female, age 67, right hemisphere 4.9
Perirhinal gyrus
nTPM: 6.1
1847 Female, age 91, left hemisphere 6.5
1841 Female, age 85, right hemisphere 6.4
1794 Male, age 80, right hemisphere 6.3
2521 Female, age 94, right hemisphere 6.0
2848 Male, age 76, right hemisphere 5.3
Subiculum
nTPM: 7.3
1901 Male, age 80, both hemispheres 8.3
2438 Female, age 94, left hemisphere 7.7
2729 Female, age 91, right hemisphere 7.4
2619 Male, age 74, both hemispheres 7.2
1977 Female, age 85, both hemispheres 6.8
2042 Male, age 76, both hemispheres 6.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.6
Samples: 197

Max nTPM: 13.1
Min nTPM: 3.1
Std nTPM: 1.7
Median nTPM: 7.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 13.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 13.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 12.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 12.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 11.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 11.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 11.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 11.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 11.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 11.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 11.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.8
FF:10153-102I9 76 years, female 49.4
FF:10169-103B7 60 years, female 30.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 21.3
Sample A Female 30.8
Sample B Female 25.7
Sample C Male 27.4
Sample D Male 21.3
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 23.5
Min nTPM: 18.7
Sample A Female 21.7
Sample B Female 23.5
Sample C Male 21.8
Sample D Male 18.7
Subiculum
nTPM: 22.3
Samples: 4

Max nTPM: 26.6
Min nTPM: 20.3
Sample A Female 26.6
Sample B Female 20.3
Sample C Male 21.4
Sample D Male 21.0
Ventral hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 25.5
Min nTPM: 19.5
Sample A Female 23.4
Sample B Female 19.5
Sample C Male 21.1
Sample D Male 25.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.7
Samples: 4

Max nTPM: 25.0
Min nTPM: 22.2
Sample A Male 25.0
Sample B Male 22.5
Sample C Female 22.2
Sample D Female 24.9
Hippocampal formation
nTPM: 21.9
Samples: 4

Max nTPM: 24.6
Min nTPM: 19.4
Sample A Male 20.6
Sample B Male 23.0
Sample C Female 24.6
Sample D Female 19.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
70300732 Antisense, RP_050607_02_C03, Mouse strain C57BL/6J (56 days, male) 7.2
74047716 Antisense, RP_051214_01_G11, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.