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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:19.3 nTPM
FANTOM5:8.5 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:1.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.0
2586 Male, age 75, left hemisphere 24.8
2828 Female, age 72, unknown 22.9
1827 Male, age 72, unknown 21.8
1833 Male, age 53, unknown 21.8
2666 Male, age 74, left hemisphere 21.6
1870 Female, age 42, unknown 21.4
1830 Male, age 51, unknown 20.0
2219 Male, age 76, both hemispheres 20.0
2019 Male, age 18, unknown 18.0
2411 Female, age 72, unknown 17.9
Dorsal raphe nucleus
nTPM: 22.4
2016 Female, age 72, unknown 27.5
1828 Male, age 53, unknown 24.4
2298 Female, age 72, unknown 21.1
2047 Male, age 72, unknown 20.9
2750 Male, age 76, both hemispheres 18.2
Inferior colliculus
nTPM: 23.5
1848 Female, age 42, unknown 26.2
2849 Male, age 72, unknown 25.0
1890 Male, age 53, unknown 21.5
2097 Female, age 72, unknown 21.5
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Pedunculopontine tegmental nucleus
nTPM: 17.1
1921 Female, age 85, both hemispheres 18.6
2334 Male, age 80, both hemispheres 17.2
2338 Male, age 61, both hemispheres 15.4
Periaquaductal grey, anterior
nTPM: 22.6
1795 Male, age 51, unknown 23.7
1947 Male, age 18, unknown 22.7
2502 Female, age 75, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 24.9
1840 Male, age 53, unknown 28.2
2850 Male, age 76, both hemispheres 25.6
2464 Female, age 72, unknown 23.6
1831 Male, age 72, unknown 22.1
Periaquaductal grey, lateral
nTPM: 24.8
2140 Male, age 76, both hemispheres 26.4
2053 Male, age 18, unknown 24.7
2272 Male, age 74, both hemispheres 23.4
Pretectal area
nTPM: 22.5
2224 Female, age 72, unknown 25.3
2825 Male, age 18, unknown 24.5
2273 Male, age 74, both hemispheres 23.2
1816 Male, age 51, unknown 23.1
1817 Female, age 42, unknown 23.1
1944 Female, age 72, unknown 23.0
2667 Female, age 75, unknown 22.8
1815 Male, age 53, unknown 21.6
2316 Male, age 76, right hemisphere 21.5
2007 Male, age 72, unknown 20.0
2407 Male, age 75, both hemispheres 19.4
Red nucleus
nTPM: 22.0
2503 Female, age 72, unknown 24.8
1954 Female, age 42, unknown 23.5
1821 Female, age 72, unknown 23.4
2227 Male, age 72, unknown 23.2
2769 Male, age 72, unknown 23.2
2823 Male, age 76, right hemisphere 22.4
2588 Male, age 74, left hemisphere 22.3
1904 Male, age 53, unknown 22.2
2725 Female, age 75, unknown 22.0
1865 Male, age 51, unknown 21.1
2785 Male, age 18, unknown 18.5
2584 Male, age 75, left hemisphere 17.1
Substantia nigra
nTPM: 22.9
2699 Male, age 18, unknown 29.4
1916 Female, age 42, unknown 24.6
2409 Female, age 72, unknown 23.8
1851 Male, age 51, unknown 23.3
2665 Male, age 74, both hemispheres 22.8
1889 Female, age 72, unknown 22.6
2241 Male, age 72, unknown 22.4
2590 Female, age 75, unknown 22.4
2583 Male, age 75, right hemisphere 19.5
1941 Male, age 53, unknown 17.7
Superior colliculus
nTPM: 21.9
1796 Male, age 53, unknown 23.3
1995 Male, age 72, unknown 22.8
2664 Male, age 75, both hemispheres 22.6
2261 Male, age 18, unknown 22.4
2668 Female, age 75, unknown 22.4
1839 Male, age 51, unknown 22.1
2087 Female, age 72, unknown 21.9
1895 Male, age 76, right hemisphere 21.3
2587 Male, age 74, left hemisphere 21.2
1913 Female, age 42, unknown 19.4
Ventral tegmental area
nTPM: 20.8
1915 Female, age 42, unknown 23.2
2410 Female, age 72, unknown 21.7
2021 Male, age 53, unknown 21.5
1942 Male, age 51, unknown 19.7
2218 Male, age 76, both hemispheres 19.6
2223 Female, age 72, unknown 18.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.3
Samples: 139

Max nTPM: 49.8
Min nTPM: 3.3
Std nTPM: 9.7
Median nTPM: 18.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 45.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 44.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 43.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 42.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 41.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 41.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 40.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 39.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 37.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 4.1
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 2.2
Sample C Male 4.1
Sample D Male 1.5
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 6.2
Min nTPM: 2.5
Sample B Female 2.5
Sample C Male 3.1
Sample D Male 6.2
Substantia nigra
nTPM: 2.4
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.0
Sample A Female 2.8
Sample B Female 2.4
Sample C Male 3.5
Sample D Male 1.0
Superior colliculi
nTPM: 2.3
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.2
Sample A Female 1.3
Sample B Female 3.5
Sample C Male 3.2
Sample D Male 1.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.2
Sample C Female 1.2
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69407684 Antisense, RP_050414_02_B07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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