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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:29.4 nTPM
HPA:29.4 nTPM
GTEx:25.5 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Pig:42.9 nTPM
Mouse:28.3 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004162
Glial cells High
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.4
Sample id Sample description nTPM
Hippocampus
nTPM: 29.4
2148 Female, age 91, left hemisphere 34.0
2529 Female, age 94, left hemisphere 32.9
2621 Female, age 67, right hemisphere 28.3
1855 Male, age 76, left hemisphere 27.4
1898 Male, age 80, left hemisphere 26.9
1911 Female, age 85, right hemisphere 26.8
Dentate gyrus
nTPM: 27.3
2528 Male, age 74, both hemispheres 31.6
2246 Female, age 85, both hemispheres 27.9
2530 Female, age 94, left hemisphere 26.7
2531 Female, age 67, both hemispheres 26.7
1927 Female, age 91, both hemispheres 26.3
2010 Male, age 76, both hemispheres 24.3
Entorhinal gyrus
nTPM: 27.3
2117 Female, age 91, right hemisphere 33.0
2686 Male, age 75, right hemisphere 29.0
1787 Male, age 76, left hemisphere 28.4
2613 Female, age 94, left hemisphere 25.2
1938 Female, age 85, left hemisphere 25.1
2764 Male, age 80, right hemisphere 23.3
Hippocampus, CA1
nTPM: 26.1
2527 Male, age 74, both hemispheres 30.9
2082 Female, age 91, right hemisphere 27.7
1873 Female, age 85, both hemispheres 26.8
2045 Male, age 76, both hemispheres 24.6
2749 Male, age 80, left hemisphere 20.4
Hippocampus, CA2
nTPM: 26.0
2113 Female, age 91, right hemisphere 28.1
2249 Male, age 74, both hemispheres 27.6
2437 Female, age 94, left hemisphere 27.0
1963 Male, age 80, left hemisphere 25.5
1940 Female, age 85, left hemisphere 24.2
1892 Male, age 76, both hemispheres 23.4
Hippocampus, CA3
nTPM: 26.2
2861 Female, age 67, both hemispheres 34.5
2620 Female, age 94, left hemisphere 31.3
1891 Female, age 85, both hemispheres 25.8
2436 Male, age 74, both hemispheres 24.1
1867 Male, age 76, both hemispheres 21.4
2137 Male, age 80, left hemisphere 20.3
Parahippocampal cortex
nTPM: 25.3
2692 Male, age 74, both hemispheres 31.8
2622 Female, age 67, right hemisphere 28.3
2250 Female, age 67, right hemisphere 26.9
2245 Female, age 91, both hemispheres 25.9
1990 Female, age 91, right hemisphere 24.8
2018 Male, age 76, both hemispheres 24.8
2693 Female, age 94, both hemispheres 23.3
1850 Male, age 80, both hemispheres 23.0
1933 Female, age 85, both hemispheres 23.0
2532 Female, age 72, left hemisphere 21.3
Perirhinal gyrus
nTPM: 23.1
1847 Female, age 91, left hemisphere 24.3
1794 Male, age 80, right hemisphere 23.6
2521 Female, age 94, right hemisphere 23.0
2848 Male, age 76, right hemisphere 23.0
1841 Female, age 85, right hemisphere 21.7
Subiculum
nTPM: 27.1
2619 Male, age 74, both hemispheres 33.0
2729 Female, age 91, right hemisphere 32.5
2438 Female, age 94, left hemisphere 29.5
2042 Male, age 76, both hemispheres 23.0
1977 Female, age 85, both hemispheres 22.7
1901 Male, age 80, both hemispheres 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.5
Samples: 197

Max nTPM: 47.0
Min nTPM: 10.0
Std nTPM: 6.7
Median nTPM: 24.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 47.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 45.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 43.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 42.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 42.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 41.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 40.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 38.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 38.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 37.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 37.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 56.8
FF:10153-102I9 76 years, female 70.7
FF:10169-103B7 60 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 35.1
Samples: 4

Max nTPM: 43.5
Min nTPM: 27.4
Sample A Female 43.5
Sample B Female 29.9
Sample C Male 39.4
Sample D Male 27.4
Entorhinal cortex
nTPM: 29.2
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.8
Sample A Female 34.7
Sample B Female 27.4
Sample C Male 29.0
Sample D Male 25.8
Subiculum
nTPM: 40.1
Samples: 4

Max nTPM: 48.7
Min nTPM: 35.6
Sample A Female 48.7
Sample B Female 38.1
Sample C Male 38.0
Sample D Male 35.6
Ventral hippocampus
nTPM: 42.9
Samples: 4

Max nTPM: 57.6
Min nTPM: 32.1
Sample A Female 45.7
Sample B Female 32.1
Sample C Male 57.6
Sample D Male 36.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 20.0
Sample A Male 25.1
Sample B Male 20.0
Sample C Female 23.6
Sample D Female 24.6
Hippocampal formation
nTPM: 28.3
Samples: 4

Max nTPM: 32.7
Min nTPM: 26.4
Sample A Male 27.3
Sample B Male 32.7
Sample C Female 26.7
Sample D Female 26.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69290435 Antisense, RP_050407_03_H12, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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