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JAM3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:56.5 nTPM
HPA:56.5 nTPM
GTEx:52.8 nTPM
FANTOM5:126.2 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:41.3 nTPM
Allen mouse:2.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003417
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Hippocampus
nTPM: 49.4
1911 Female, age 85, right hemisphere 54.9
2621 Female, age 67, right hemisphere 49.9
2148 Female, age 91, left hemisphere 48.3
2529 Female, age 94, left hemisphere 48.2
1898 Male, age 80, left hemisphere 48.0
1855 Male, age 76, left hemisphere 47.3
Dentate gyrus
nTPM: 50.5
2530 Female, age 94, left hemisphere 55.7
2010 Male, age 76, both hemispheres 51.5
2528 Male, age 74, both hemispheres 51.3
2246 Female, age 85, both hemispheres 49.4
2531 Female, age 67, both hemispheres 49.3
1927 Female, age 91, both hemispheres 45.9
Entorhinal gyrus
nTPM: 52.2
2117 Female, age 91, right hemisphere 65.8
2764 Male, age 80, right hemisphere 54.6
1938 Female, age 85, left hemisphere 50.7
2613 Female, age 94, left hemisphere 50.7
1787 Male, age 76, left hemisphere 46.3
2686 Male, age 75, right hemisphere 45.2
Hippocampus, CA1
nTPM: 48.4
2082 Female, age 91, right hemisphere 49.8
2527 Male, age 74, both hemispheres 49.7
1873 Female, age 85, both hemispheres 49.0
2749 Male, age 80, left hemisphere 48.1
2045 Male, age 76, both hemispheres 45.6
Hippocampus, CA2
nTPM: 50.3
2249 Male, age 74, both hemispheres 55.4
1963 Male, age 80, left hemisphere 54.6
2113 Female, age 91, right hemisphere 49.5
2437 Female, age 94, left hemisphere 48.8
1940 Female, age 85, left hemisphere 47.7
1892 Male, age 76, both hemispheres 45.9
Hippocampus, CA3
nTPM: 51.9
1891 Female, age 85, both hemispheres 61.3
2620 Female, age 94, left hemisphere 59.5
1867 Male, age 76, both hemispheres 52.6
2436 Male, age 74, both hemispheres 49.7
2137 Male, age 80, left hemisphere 46.2
2861 Female, age 67, both hemispheres 42.0
Parahippocampal cortex
nTPM: 47.9
2532 Female, age 72, left hemisphere 55.1
1990 Female, age 91, right hemisphere 53.6
2692 Male, age 74, both hemispheres 52.3
1850 Male, age 80, both hemispheres 48.8
2693 Female, age 94, both hemispheres 47.9
2018 Male, age 76, both hemispheres 47.8
1933 Female, age 85, both hemispheres 47.5
2245 Female, age 91, both hemispheres 46.4
2250 Female, age 67, right hemisphere 41.8
2622 Female, age 67, right hemisphere 38.0
Perirhinal gyrus
nTPM: 44.7
2521 Female, age 94, right hemisphere 51.1
1794 Male, age 80, right hemisphere 44.1
1847 Female, age 91, left hemisphere 43.8
2848 Male, age 76, right hemisphere 42.4
1841 Female, age 85, right hemisphere 42.1
Subiculum
nTPM: 56.5
2042 Male, age 76, both hemispheres 68.5
1901 Male, age 80, both hemispheres 61.7
1977 Female, age 85, both hemispheres 60.3
2438 Female, age 94, left hemisphere 50.3
2729 Female, age 91, right hemisphere 49.3
2619 Male, age 74, both hemispheres 49.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.8
Samples: 197

Max nTPM: 156.7
Min nTPM: 14.3
Std nTPM: 25.2
Median nTPM: 48.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 156.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 140.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 138.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 114.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 112.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 112.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 109.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 107.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 107.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 102.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 100.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 126.2
FF:10169-103B7 60 years, female 141.2
FF:10153-102I9 76 years, female 111.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 24.1
Samples: 4

Max nTPM: 35.6
Min nTPM: 12.8
Sample A Female 35.6
Sample B Female 20.1
Sample C Male 28.0
Sample D Male 12.8
Entorhinal cortex
nTPM: 11.2
Samples: 4

Max nTPM: 14.3
Min nTPM: 9.9
Sample A Female 10.6
Sample B Female 14.3
Sample C Male 9.9
Sample D Male 10.0
Subiculum
nTPM: 12.4
Samples: 4

Max nTPM: 13.3
Min nTPM: 10.6
Sample A Female 13.3
Sample B Female 13.3
Sample C Male 10.6
Sample D Male 12.2
Ventral hippocampus
nTPM: 16.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 10.7
Sample A Female 18.1
Sample B Female 10.7
Sample C Male 15.3
Sample D Male 21.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.6
Samples: 4

Max nTPM: 32.7
Min nTPM: 20.5
Sample A Male 31.6
Sample B Male 25.7
Sample C Female 32.7
Sample D Female 20.5
Hippocampal formation
nTPM: 41.3
Samples: 4

Max nTPM: 52.2
Min nTPM: 35.6
Sample A Male 35.8
Sample B Male 35.6
Sample C Female 52.2
Sample D Female 41.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
77465024 Antisense, RP_070129_03_A01, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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