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SMPD1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.7 nTPM
HPA:44.7 nTPM
GTEx:29.6 nTPM
FANTOM5:81.1 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:110.8 nTPM
Allen mouse:4.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.3
2288 Male, age 75, left hemisphere 41.2
2481 Female, age 94, left hemisphere 36.8
2290 Female, age 72, unknown 36.2
1781 Male, age 74, unknown 36.1
1854 Male, age 80, left hemisphere 35.6
1857 Female, age 85, left hemisphere 35.2
2846 Female, age 79, unknown 34.9
2289 Male, age 61, right hemisphere 34.7
Claustrum
nTPM: 37.8
2292 Female, age 85, both hemispheres 41.9
1956 Male, age 74, unknown 39.7
2198 Male, age 80, both hemispheres 39.3
2568 Male, age 61, both hemispheres 38.2
2284 Female, age 91, both hemispheres 37.1
2196 Female, age 79, unknown 36.9
2491 Male, age 75, both hemispheres 36.2
2392 Female, age 94, both hemispheres 35.8
2645 Female, age 72, unknown 35.3
Globus pallidus, externus
nTPM: 44.0
2772 Female, age 79, unknown 46.5
1996 Male, age 80, right hemisphere 46.4
2395 Male, age 75, both hemispheres 44.4
2567 Female, age 72, unknown 41.3
2646 Male, age 61, right hemisphere 41.3
Globus pallidus, internus
nTPM: 44.7
2287 Male, age 75, right hemisphere 49.9
2111 Female, age 85, right hemisphere 48.1
2778 Female, age 91, both hemispheres 44.8
1818 Male, age 74, unknown 43.8
2037 Male, age 80, right hemisphere 42.4
2483 Female, age 94, right hemisphere 42.1
2566 Female, age 72, unknown 42.1
Nucleus accumbens
nTPM: 36.1
2286 Male, age 75, left hemisphere 41.3
2391 Female, age 94, left hemisphere 37.3
2698 Female, age 72, unknown 36.8
1783 Male, age 74, unknown 35.7
1806 Female, age 85, left hemisphere 35.5
2732 Male, age 80, right hemisphere 35.1
1856 Female, age 91, right hemisphere 34.7
2824 Male, age 61, right hemisphere 32.6
Nucleus basalis of Meynert
nTPM: 37.0
2569 Male, age 61, both hemispheres 41.0
2821 Male, age 75, both hemispheres 37.0
2484 Female, age 94, left hemisphere 35.9
2393 Male, age 80, right hemisphere 34.1
Nucleus of the diagonal band
nTPM: 36.3
2775 Male, age 80, right hemisphere 38.5
1812 Female, age 91, both hemispheres 38.1
2029 Male, age 61, right hemisphere 36.0
2195 Female, age 85, both hemispheres 35.5
1979 Male, age 74, unknown 33.6
Olfactory tubercle
nTPM: 36.0
1846 Male, age 80, right hemisphere 36.9
2487 Female, age 94, left hemisphere 36.6
1998 Female, age 91, both hemispheres 36.0
2856 Male, age 75, right hemisphere 34.7
Putamen
nTPM: 36.5
2647 Male, age 75, left hemisphere 39.0
2482 Female, age 94, left hemisphere 37.4
1829 Male, age 74, unknown 36.6
2489 Female, age 72, unknown 36.5
2466 Female, age 79, unknown 36.1
1937 Female, age 91, right hemisphere 35.2
1838 Male, age 80, right hemisphere 34.4
Septal nuclei
nTPM: 35.9
2394 Male, age 61, left hemisphere 37.5
1960 Male, age 74, unknown 37.0
2031 Female, age 72, unknown 36.8
2059 Female, age 85, both hemispheres 36.3
2629 Female, age 94, right hemisphere 35.1
2009 Female, age 91, both hemispheres 34.2
2199 Male, age 80, right hemisphere 34.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 54.4
Min nTPM: 10.2
Std nTPM: 7.0
Median nTPM: 23.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 54.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 53.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 47.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 46.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 43.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 43.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 39.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 38.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 38.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 37.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.1
Samples: 246

Max nTPM: 59.9
Min nTPM: 10.6
Std nTPM: 7.2
Median nTPM: 20.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 59.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 52.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 46.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 43.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 39.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 39.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 39.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 38.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 38.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 38.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 36.8
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Brain - Putamen (basal ganglia)
Average nTPM: 29.6
Samples: 205

Max nTPM: 58.6
Min nTPM: 11.3
Std nTPM: 8.3
Median nTPM: 28.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 58.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 54.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 54.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 52.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 50.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 50.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 48.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 47.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 47.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 46.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 46.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.9
FF:10164-103B2 76 years, female 38.9
Globus pallidus
Scaled Tags Per Million: 59.1
FF:10161-103A8 76 years, female 61.4
FF:10175-103C4 60 years, female 56.8
Nucleus accumbens
Scaled Tags Per Million: 81.1
FF:10037-101F1 23-56 years, mixed 81.1
Putamen
Scaled Tags Per Million: 54.6
FF:10176-103C5 60 years, female 54.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Caudate
nTPM: 13.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.3
Sample A Female 12.1
Sample B Female 13.9
Sample C Male 14.7
Sample D Male 11.3
Putamen
nTPM: 24.8
Samples: 4

Max nTPM: 40.9
Min nTPM: 13.2
Sample A Female 40.9
Sample B Female 13.2
Sample C Male 19.2
Sample D Male 26.0
Septum
nTPM: 17.2
Samples: 4

Max nTPM: 19.5
Min nTPM: 13.3
Sample A Female 17.6
Sample B Female 13.3
Sample C Male 19.5
Sample D Male 18.2
Ventral pallidum
nTPM: 22.5
Samples: 4

Max nTPM: 34.9
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 19.3
Sample C Male 34.9
Sample D Male 22.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 110.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 85.9
Samples: 4

Max nTPM: 88.6
Min nTPM: 78.0
Sample A Male 88.4
Sample B Male 88.6
Sample C Female 78.0
Sample D Female 88.6
Septum
nTPM: 110.8
Samples: 4

Max nTPM: 122.2
Min nTPM: 96.6
Sample A Male 109.4
Sample B Male 115.1
Sample C Female 122.2
Sample D Female 96.6
Ventral forebrain
nTPM: 104.3
Samples: 4

Max nTPM: 122.9
Min nTPM: 92.7
Sample A Male 92.7
Sample B Male 105.2
Sample C Female 122.9
Sample D Female 96.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.9
67881552 Antisense, RP_041018_01_E09, Mouse strain C57BL/6J (56 days, male) 10.0
75694482 Antisense, RP_060518_03_G11, Mouse strain C57BL/6J (56 days, male) 2.9
77413684 Antisense, RP_070205_01_C09, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 4.7
67881552 Antisense, RP_041018_01_E09, Mouse strain C57BL/6J (56 days, male) 9.4
75694482 Antisense, RP_060518_03_G11, Mouse strain C57BL/6J (56 days, male) 3.1
77413684 Antisense, RP_070205_01_C09, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.