ABOUTMENU
HELP
NEWS
SMPD1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA:39.1 nTPM
GTEx:26.7 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:96.8 nTPM
Allen mouse:7.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.1
Sample id Sample description nTPM
Hippocampus
nTPM: 37.9
1898 Male, age 80, left hemisphere 40.6
1855 Male, age 76, left hemisphere 39.2
2148 Female, age 91, left hemisphere 37.2
2621 Female, age 67, right hemisphere 37.0
2529 Female, age 94, left hemisphere 36.9
1911 Female, age 85, right hemisphere 36.3
Dentate gyrus
nTPM: 37.7
2530 Female, age 94, left hemisphere 42.0
2010 Male, age 76, both hemispheres 39.5
2528 Male, age 74, both hemispheres 38.5
2246 Female, age 85, both hemispheres 36.5
1927 Female, age 91, both hemispheres 35.4
2531 Female, age 67, both hemispheres 34.6
Entorhinal gyrus
nTPM: 38.2
2117 Female, age 91, right hemisphere 41.3
2764 Male, age 80, right hemisphere 40.9
2613 Female, age 94, left hemisphere 40.2
1787 Male, age 76, left hemisphere 36.9
1938 Female, age 85, left hemisphere 36.4
2686 Male, age 75, right hemisphere 33.7
Hippocampus, CA1
nTPM: 39.1
2749 Male, age 80, left hemisphere 47.2
2527 Male, age 74, both hemispheres 39.2
1873 Female, age 85, both hemispheres 38.8
2045 Male, age 76, both hemispheres 35.2
2082 Female, age 91, right hemisphere 35.2
Hippocampus, CA2
nTPM: 38.4
1963 Male, age 80, left hemisphere 45.5
2437 Female, age 94, left hemisphere 38.0
2249 Male, age 74, both hemispheres 37.9
1892 Male, age 76, both hemispheres 37.3
1940 Female, age 85, left hemisphere 36.3
2113 Female, age 91, right hemisphere 35.5
Hippocampus, CA3
nTPM: 37.1
2620 Female, age 94, left hemisphere 37.9
1867 Male, age 76, both hemispheres 37.7
2137 Male, age 80, left hemisphere 37.6
1891 Female, age 85, both hemispheres 37.5
2436 Male, age 74, both hemispheres 36.7
2861 Female, age 67, both hemispheres 35.4
Parahippocampal cortex
nTPM: 36.0
1850 Male, age 80, both hemispheres 38.9
1990 Female, age 91, right hemisphere 36.8
2245 Female, age 91, both hemispheres 36.8
2532 Female, age 72, left hemisphere 36.7
2692 Male, age 74, both hemispheres 36.4
1933 Female, age 85, both hemispheres 36.3
2250 Female, age 67, right hemisphere 36.2
2018 Male, age 76, both hemispheres 34.5
2693 Female, age 94, both hemispheres 34.3
2622 Female, age 67, right hemisphere 33.1
Perirhinal gyrus
nTPM: 37.4
1794 Male, age 80, right hemisphere 39.9
1847 Female, age 91, left hemisphere 38.5
2521 Female, age 94, right hemisphere 37.7
2848 Male, age 76, right hemisphere 35.4
1841 Female, age 85, right hemisphere 35.3
Subiculum
nTPM: 37.9
1901 Male, age 80, both hemispheres 38.3
2042 Male, age 76, both hemispheres 38.3
2619 Male, age 74, both hemispheres 38.0
2438 Female, age 94, left hemisphere 37.8
2729 Female, age 91, right hemisphere 37.5
1977 Female, age 85, both hemispheres 37.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.7
Samples: 197

Max nTPM: 48.4
Min nTPM: 12.7
Std nTPM: 6.4
Median nTPM: 26.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 48.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 43.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 43.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 43.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 42.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 41.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 41.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 40.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 39.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 39.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 38.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 53.8
FF:10153-102I9 76 years, female 56.4
FF:10169-103B7 60 years, female 51.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.3
Samples: 4

Max nTPM: 31.4
Min nTPM: 11.1
Sample A Female 31.4
Sample B Female 17.4
Sample C Male 25.2
Sample D Male 11.1
Entorhinal cortex
nTPM: 16.6
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.5
Sample A Female 18.7
Sample B Female 16.7
Sample C Male 16.5
Sample D Male 14.5
Subiculum
nTPM: 15.0
Samples: 4

Max nTPM: 20.0
Min nTPM: 11.5
Sample A Female 20.0
Sample B Female 11.5
Sample C Male 14.8
Sample D Male 13.6
Ventral hippocampus
nTPM: 19.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 10.2
Sample A Female 21.6
Sample B Female 10.2
Sample C Male 25.9
Sample D Male 19.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 96.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 96.8
Samples: 4

Max nTPM: 110.0
Min nTPM: 90.9
Sample A Male 92.9
Sample B Male 93.3
Sample C Female 90.9
Sample D Female 110.0
Hippocampal formation
nTPM: 85.5
Samples: 4

Max nTPM: 92.3
Min nTPM: 79.5
Sample A Male 79.7
Sample B Male 79.5
Sample C Female 92.3
Sample D Female 90.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.9
67881552 Antisense, RP_041018_01_E09, Mouse strain C57BL/6J (56 days, male) 15.3
75694482 Antisense, RP_060518_03_G11, Mouse strain C57BL/6J (56 days, male) 4.3
77413684 Antisense, RP_070205_01_C09, Mouse strain C57BL/6J (56 days, male) 4.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.