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TPP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.6 nTPM
HPA:82.6 nTPM
GTEx:73.4 nTPM
FANTOM5:138.8 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:38.2 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.5
1870 Female, age 42, unknown 77.9
1833 Male, age 53, unknown 77.8
1830 Male, age 51, unknown 75.6
2411 Female, age 72, unknown 74.0
2019 Male, age 18, unknown 73.0
2828 Female, age 72, unknown 71.3
2666 Male, age 74, left hemisphere 63.8
2219 Male, age 76, both hemispheres 62.0
1827 Male, age 72, unknown 60.6
2586 Male, age 75, left hemisphere 59.0
Dorsal raphe nucleus
nTPM: 72.6
1828 Male, age 53, unknown 76.6
2750 Male, age 76, both hemispheres 75.7
2047 Male, age 72, unknown 71.5
2016 Female, age 72, unknown 70.6
2298 Female, age 72, unknown 68.4
Inferior colliculus
nTPM: 67.4
1848 Female, age 42, unknown 69.3
1890 Male, age 53, unknown 67.2
2097 Female, age 72, unknown 66.9
2849 Male, age 72, unknown 66.3
Median raphe nucleus
nTPM: 82.6
2220 Male, age 76, midline 82.6
Pedunculopontine tegmental nucleus
nTPM: 74.2
2338 Male, age 61, both hemispheres 86.5
2334 Male, age 80, both hemispheres 73.0
1921 Female, age 85, both hemispheres 63.1
Periaquaductal grey, anterior
nTPM: 66.3
1947 Male, age 18, unknown 68.7
2502 Female, age 75, unknown 67.9
1795 Male, age 51, unknown 62.2
Periaquaductal grey, dorsal
nTPM: 68.4
2850 Male, age 76, both hemispheres 77.6
2464 Female, age 72, unknown 67.7
1831 Male, age 72, unknown 65.8
1840 Male, age 53, unknown 62.7
Periaquaductal grey, lateral
nTPM: 69.9
2272 Male, age 74, both hemispheres 73.1
2140 Male, age 76, both hemispheres 72.8
2053 Male, age 18, unknown 63.6
Pretectal area
nTPM: 69.6
2667 Female, age 75, unknown 83.9
1817 Female, age 42, unknown 76.0
2273 Male, age 74, both hemispheres 73.1
2224 Female, age 72, unknown 71.4
1815 Male, age 53, unknown 70.2
2407 Male, age 75, both hemispheres 67.3
2825 Male, age 18, unknown 67.2
2316 Male, age 76, right hemisphere 65.0
1816 Male, age 51, unknown 64.4
2007 Male, age 72, unknown 64.1
1944 Female, age 72, unknown 63.4
Red nucleus
nTPM: 79.2
1821 Female, age 72, unknown 91.6
1954 Female, age 42, unknown 88.7
1904 Male, age 53, unknown 85.7
1865 Male, age 51, unknown 84.7
2769 Male, age 72, unknown 83.7
2227 Male, age 72, unknown 82.6
2503 Female, age 72, unknown 82.1
2823 Male, age 76, right hemisphere 81.7
2785 Male, age 18, unknown 73.9
2725 Female, age 75, unknown 71.1
2588 Male, age 74, left hemisphere 63.6
2584 Male, age 75, left hemisphere 61.2
Substantia nigra
nTPM: 79.4
1916 Female, age 42, unknown 97.5
2699 Male, age 18, unknown 96.7
1851 Male, age 51, unknown 86.2
2409 Female, age 72, unknown 84.8
2241 Male, age 72, unknown 83.0
1889 Female, age 72, unknown 74.5
1941 Male, age 53, unknown 74.2
2590 Female, age 75, unknown 68.5
2583 Male, age 75, right hemisphere 65.5
2665 Male, age 74, both hemispheres 63.6
Superior colliculus
nTPM: 67.4
1995 Male, age 72, unknown 75.3
1913 Female, age 42, unknown 74.6
2587 Male, age 74, left hemisphere 72.1
1839 Male, age 51, unknown 68.2
2668 Female, age 75, unknown 67.9
2087 Female, age 72, unknown 67.1
1895 Male, age 76, right hemisphere 63.5
1796 Male, age 53, unknown 63.4
2664 Male, age 75, both hemispheres 60.9
2261 Male, age 18, unknown 60.6
Ventral tegmental area
nTPM: 77.9
2410 Female, age 72, unknown 84.2
1915 Female, age 42, unknown 83.4
2218 Male, age 76, both hemispheres 80.0
2223 Female, age 72, unknown 79.6
2021 Male, age 53, unknown 72.2
1942 Male, age 51, unknown 68.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.4
Samples: 139

Max nTPM: 153.4
Min nTPM: 38.6
Std nTPM: 20.2
Median nTPM: 68.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 153.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 138.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 135.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 129.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 117.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 116.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 114.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 110.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 109.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 107.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 106.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.8
FF:10158-103A5 76 years, female 138.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 51.2
Min nTPM: 25.1
Sample A Female 51.2
Sample B Female 31.4
Sample C Male 28.8
Sample D Male 25.1
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 29.2
Min nTPM: 27.0
Sample B Female 29.2
Sample C Male 27.4
Sample D Male 27.0
Substantia nigra
nTPM: 39.6
Samples: 4

Max nTPM: 43.8
Min nTPM: 36.4
Sample A Female 41.5
Sample B Female 36.4
Sample C Male 36.7
Sample D Male 43.8
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 44.8
Min nTPM: 30.5
Sample A Female 44.8
Sample B Female 36.5
Sample C Male 30.5
Sample D Male 37.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 42.4
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 36.4
Sample C Female 42.4
Sample D Female 38.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68148756 Antisense, RP_041116_02_B11, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.