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USP54
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:60.5 nTPM
HPA:60.5 nTPM
GTEx:10.3 nTPM
FANTOM5:54.3 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:29.6 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA063665
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 60.5
Sample id Sample description nTPM
Hippocampus
nTPM: 46.8
2529 Female, age 94, left hemisphere 53.8
1911 Female, age 85, right hemisphere 50.6
2621 Female, age 67, right hemisphere 48.8
2148 Female, age 91, left hemisphere 45.2
1898 Male, age 80, left hemisphere 41.7
1855 Male, age 76, left hemisphere 40.7
Dentate gyrus
nTPM: 48.6
2530 Female, age 94, left hemisphere 64.9
2528 Male, age 74, both hemispheres 50.9
2246 Female, age 85, both hemispheres 48.2
2010 Male, age 76, both hemispheres 46.6
2531 Female, age 67, both hemispheres 43.5
1927 Female, age 91, both hemispheres 37.8
Entorhinal gyrus
nTPM: 52.1
2117 Female, age 91, right hemisphere 68.5
2764 Male, age 80, right hemisphere 55.8
2686 Male, age 75, right hemisphere 51.1
2613 Female, age 94, left hemisphere 50.6
1938 Female, age 85, left hemisphere 44.0
1787 Male, age 76, left hemisphere 42.4
Hippocampus, CA1
nTPM: 41.4
2082 Female, age 91, right hemisphere 48.3
2527 Male, age 74, both hemispheres 48.1
1873 Female, age 85, both hemispheres 43.3
2749 Male, age 80, left hemisphere 36.6
2045 Male, age 76, both hemispheres 30.6
Hippocampus, CA2
nTPM: 49.1
1963 Male, age 80, left hemisphere 55.9
2437 Female, age 94, left hemisphere 53.9
2249 Male, age 74, both hemispheres 51.1
2113 Female, age 91, right hemisphere 50.9
1940 Female, age 85, left hemisphere 49.3
1892 Male, age 76, both hemispheres 33.9
Hippocampus, CA3
nTPM: 42.8
1891 Female, age 85, both hemispheres 61.3
1867 Male, age 76, both hemispheres 42.6
2436 Male, age 74, both hemispheres 41.9
2861 Female, age 67, both hemispheres 39.5
2137 Male, age 80, left hemisphere 35.9
2620 Female, age 94, left hemisphere 35.5
Parahippocampal cortex
nTPM: 47.9
2692 Male, age 74, both hemispheres 62.0
1990 Female, age 91, right hemisphere 54.7
2532 Female, age 72, left hemisphere 54.7
1850 Male, age 80, both hemispheres 46.1
2018 Male, age 76, both hemispheres 45.9
1933 Female, age 85, both hemispheres 44.8
2245 Female, age 91, both hemispheres 43.3
2693 Female, age 94, both hemispheres 43.0
2622 Female, age 67, right hemisphere 42.6
2250 Female, age 67, right hemisphere 41.5
Perirhinal gyrus
nTPM: 38.9
2848 Male, age 76, right hemisphere 39.9
2521 Female, age 94, right hemisphere 39.7
1847 Female, age 91, left hemisphere 39.4
1841 Female, age 85, right hemisphere 38.3
1794 Male, age 80, right hemisphere 37.0
Subiculum
nTPM: 60.5
2438 Female, age 94, left hemisphere 67.0
1901 Male, age 80, both hemispheres 65.0
2042 Male, age 76, both hemispheres 64.9
1977 Female, age 85, both hemispheres 58.3
2619 Male, age 74, both hemispheres 56.9
2729 Female, age 91, right hemisphere 50.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.3
Samples: 197

Max nTPM: 28.4
Min nTPM: 0.9
Std nTPM: 5.8
Median nTPM: 8.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 28.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 28.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 27.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 25.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 25.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 24.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 24.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 23.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 22.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 21.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 21.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.3
FF:10153-102I9 76 years, female 78.3
FF:10169-103B7 60 years, female 30.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 34.7
Samples: 4

Max nTPM: 42.4
Min nTPM: 25.2
Sample A Female 38.4
Sample B Female 32.9
Sample C Male 42.4
Sample D Male 25.2
Entorhinal cortex
nTPM: 26.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 31.3
Sample C Male 26.9
Sample D Male 24.8
Subiculum
nTPM: 29.8
Samples: 4

Max nTPM: 33.4
Min nTPM: 27.7
Sample A Female 28.1
Sample B Female 33.4
Sample C Male 29.8
Sample D Male 27.7
Ventral hippocampus
nTPM: 33.6
Samples: 4

Max nTPM: 35.9
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 32.5
Sample C Male 35.9
Sample D Male 34.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.4
Samples: 4

Max nTPM: 31.0
Min nTPM: 23.2
Sample A Male 31.0
Sample B Male 24.5
Sample C Female 26.9
Sample D Female 23.2
Hippocampal formation
nTPM: 29.6
Samples: 4

Max nTPM: 34.3
Min nTPM: 24.5
Sample A Male 24.5
Sample B Male 27.0
Sample C Female 34.3
Sample D Female 32.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
70194660 Antisense, RP_050517_01_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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