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TMPRSS5
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.7 nTPM
HPA:34.7 nTPM
GTEx:17.1 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:0.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.0
1781 Male, age 74, unknown 31.2
2481 Female, age 94, left hemisphere 31.1
2290 Female, age 72, unknown 27.5
1854 Male, age 80, left hemisphere 27.4
2288 Male, age 75, left hemisphere 25.9
1857 Female, age 85, left hemisphere 24.3
2846 Female, age 79, unknown 24.3
2289 Male, age 61, right hemisphere 24.2
Claustrum
nTPM: 28.0
2292 Female, age 85, both hemispheres 34.3
2568 Male, age 61, both hemispheres 29.3
2491 Male, age 75, both hemispheres 28.3
2198 Male, age 80, both hemispheres 28.2
2392 Female, age 94, both hemispheres 28.1
2284 Female, age 91, both hemispheres 26.7
2645 Female, age 72, unknown 26.6
1956 Male, age 74, unknown 25.7
2196 Female, age 79, unknown 24.9
Globus pallidus, externus
nTPM: 34.7
2646 Male, age 61, right hemisphere 41.1
1996 Male, age 80, right hemisphere 34.6
2567 Female, age 72, unknown 33.3
2395 Male, age 75, both hemispheres 33.1
2772 Female, age 79, unknown 31.2
Globus pallidus, internus
nTPM: 34.5
2111 Female, age 85, right hemisphere 46.2
2778 Female, age 91, both hemispheres 37.3
2037 Male, age 80, right hemisphere 34.4
2287 Male, age 75, right hemisphere 33.0
2483 Female, age 94, right hemisphere 31.5
2566 Female, age 72, unknown 30.3
1818 Male, age 74, unknown 28.9
Nucleus accumbens
nTPM: 27.4
2732 Male, age 80, right hemisphere 32.1
2391 Female, age 94, left hemisphere 30.2
2286 Male, age 75, left hemisphere 27.4
1806 Female, age 85, left hemisphere 27.0
2698 Female, age 72, unknown 26.8
1783 Male, age 74, unknown 26.5
2824 Male, age 61, right hemisphere 26.3
1856 Female, age 91, right hemisphere 23.2
Nucleus basalis of Meynert
nTPM: 29.4
2569 Male, age 61, both hemispheres 35.2
2393 Male, age 80, right hemisphere 28.1
2484 Female, age 94, left hemisphere 27.3
2821 Male, age 75, both hemispheres 26.9
Nucleus of the diagonal band
nTPM: 23.7
1979 Male, age 74, unknown 26.2
2775 Male, age 80, right hemisphere 23.6
1812 Female, age 91, both hemispheres 23.2
2029 Male, age 61, right hemisphere 22.8
2195 Female, age 85, both hemispheres 22.5
Olfactory tubercle
nTPM: 24.7
1846 Male, age 80, right hemisphere 25.3
1998 Female, age 91, both hemispheres 24.5
2487 Female, age 94, left hemisphere 24.5
2856 Male, age 75, right hemisphere 24.4
Putamen
nTPM: 26.3
2489 Female, age 72, unknown 28.2
2482 Female, age 94, left hemisphere 27.5
2647 Male, age 75, left hemisphere 27.2
2466 Female, age 79, unknown 26.4
1937 Female, age 91, right hemisphere 25.9
1829 Male, age 74, unknown 25.2
1838 Male, age 80, right hemisphere 23.9
Septal nuclei
nTPM: 25.9
2199 Male, age 80, right hemisphere 28.1
2394 Male, age 61, left hemisphere 27.4
2059 Female, age 85, both hemispheres 26.5
2009 Female, age 91, both hemispheres 25.1
2031 Female, age 72, unknown 25.1
1960 Male, age 74, unknown 25.0
2629 Female, age 94, right hemisphere 24.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.1
Samples: 246

Max nTPM: 60.6
Min nTPM: 2.8
Std nTPM: 9.5
Median nTPM: 14.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 60.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 56.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 48.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 47.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 46.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 43.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 40.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 39.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 39.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 39.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 37.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 44.0
Min nTPM: 2.5
Std nTPM: 7.2
Median nTPM: 10.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 44.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 36.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 36.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 35.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 34.4
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 32.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 30.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 29.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 29.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 29.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 28.4
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Brain - Putamen (basal ganglia)
Average nTPM: 16.8
Samples: 205

Max nTPM: 50.6
Min nTPM: 2.1
Std nTPM: 9.7
Median nTPM: 13.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 50.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 49.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 44.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 43.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 41.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 39.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 39.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 38.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 38.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 38.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 37.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.5
FF:10164-103B2 76 years, female 13.5
Globus pallidus
Scaled Tags Per Million: 45.1
FF:10175-103C4 60 years, female 74.2
FF:10161-103A8 76 years, female 16.0
Nucleus accumbens
Scaled Tags Per Million: 12.1
FF:10037-101F1 23-56 years, mixed 12.1
Putamen
Scaled Tags Per Million: 27.6
FF:10176-103C5 60 years, female 27.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.2
Sample A Female 3.8
Sample B Female 2.2
Sample C Male 2.8
Sample D Male 2.3
Putamen
nTPM: 2.0
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.1
Sample A Female 3.5
Sample B Female 1.1
Sample C Male 1.2
Sample D Male 2.2
Septum
nTPM: 2.0
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.1
Sample A Female 2.1
Sample B Female 1.1
Sample C Male 1.4
Sample D Male 3.2
Ventral pallidum
nTPM: 2.0
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 1.3
Sample C Male 2.5
Sample D Male 3.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Male 0.5
Sample B Male 0.7
Sample C Female 0.8
Sample D Female 0.3
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.5
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.2
Sample C Female 0.6
Sample D Female 0.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74957887 Antisense, RP_060315_05_A02, Mouse strain C57BL/6J (56 days, male) 0.1
69981121 Antisense, RP_050512_04_F11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74957887 Antisense, RP_060315_05_A02, Mouse strain C57BL/6J (56 days, male) 0.1
69981121 Antisense, RP_050512_04_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.