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COG1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA:28.0 nTPM
GTEx:15.4 nTPM
FANTOM5:20.2 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:21.5 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
1827 Male, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 25.3
2411 Female, age 72, unknown 24.8
2828 Female, age 72, unknown 24.8
2586 Male, age 75, left hemisphere 24.5
2019 Male, age 18, unknown 24.2
2666 Male, age 74, left hemisphere 24.1
1870 Female, age 42, unknown 23.7
1833 Male, age 53, unknown 23.5
1830 Male, age 51, unknown 23.4
Dorsal raphe nucleus
nTPM: 25.1
2298 Female, age 72, unknown 27.1
2047 Male, age 72, unknown 26.0
2750 Male, age 76, both hemispheres 25.9
1828 Male, age 53, unknown 23.7
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 23.8
2097 Female, age 72, unknown 24.8
2849 Male, age 72, unknown 24.0
1890 Male, age 53, unknown 23.4
1848 Female, age 42, unknown 22.9
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 24.3
1921 Female, age 85, both hemispheres 25.0
2334 Male, age 80, both hemispheres 25.0
2338 Male, age 61, both hemispheres 22.8
Periaquaductal grey, anterior
nTPM: 25.0
1795 Male, age 51, unknown 26.1
1947 Male, age 18, unknown 24.7
2502 Female, age 75, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 24.7
1840 Male, age 53, unknown 25.3
2850 Male, age 76, both hemispheres 24.8
2464 Female, age 72, unknown 24.5
1831 Male, age 72, unknown 24.3
Periaquaductal grey, lateral
nTPM: 25.2
2272 Male, age 74, both hemispheres 26.2
2140 Male, age 76, both hemispheres 24.8
2053 Male, age 18, unknown 24.5
Pretectal area
nTPM: 26.0
1816 Male, age 51, unknown 27.7
1817 Female, age 42, unknown 26.8
1944 Female, age 72, unknown 26.7
2224 Female, age 72, unknown 26.6
2007 Male, age 72, unknown 26.3
2667 Female, age 75, unknown 25.9
2273 Male, age 74, both hemispheres 25.8
1815 Male, age 53, unknown 25.7
2825 Male, age 18, unknown 25.7
2316 Male, age 76, right hemisphere 24.3
2407 Male, age 75, both hemispheres 24.2
Red nucleus
nTPM: 23.7
2588 Male, age 74, left hemisphere 24.9
2725 Female, age 75, unknown 24.5
2823 Male, age 76, right hemisphere 24.0
1821 Female, age 72, unknown 23.9
1904 Male, age 53, unknown 23.9
2785 Male, age 18, unknown 23.7
1954 Female, age 42, unknown 23.6
2584 Male, age 75, left hemisphere 23.6
2769 Male, age 72, unknown 23.5
2227 Male, age 72, unknown 23.3
2503 Female, age 72, unknown 23.0
1865 Male, age 51, unknown 22.6
Substantia nigra
nTPM: 25.7
1916 Female, age 42, unknown 28.8
1851 Male, age 51, unknown 26.5
2241 Male, age 72, unknown 26.1
1941 Male, age 53, unknown 25.9
1889 Female, age 72, unknown 25.6
2699 Male, age 18, unknown 25.6
2590 Female, age 75, unknown 25.3
2409 Female, age 72, unknown 24.9
2583 Male, age 75, right hemisphere 24.4
2665 Male, age 74, both hemispheres 24.3
Superior colliculus
nTPM: 24.5
1796 Male, age 53, unknown 27.1
2261 Male, age 18, unknown 25.9
2087 Female, age 72, unknown 25.8
2668 Female, age 75, unknown 24.9
2664 Male, age 75, both hemispheres 24.4
1895 Male, age 76, right hemisphere 23.7
1913 Female, age 42, unknown 23.7
1839 Male, age 51, unknown 23.6
2587 Male, age 74, left hemisphere 23.2
1995 Male, age 72, unknown 22.9
Ventral tegmental area
nTPM: 25.5
2410 Female, age 72, unknown 26.3
2218 Male, age 76, both hemispheres 25.7
1915 Female, age 42, unknown 25.6
1942 Male, age 51, unknown 25.3
2223 Female, age 72, unknown 25.3
2021 Male, age 53, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 27.6
Min nTPM: 6.9
Std nTPM: 3.9
Median nTPM: 14.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 23.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 23.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 23.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 23.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 22.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 22.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.2
FF:10158-103A5 76 years, female 20.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 30.1
Min nTPM: 19.1
Sample A Female 19.2
Sample B Female 19.7
Sample C Male 30.1
Sample D Male 19.1
Periaqueductal gray
nTPM: 18.9
Samples: 3

Max nTPM: 21.0
Min nTPM: 15.3
Sample B Female 20.5
Sample C Male 21.0
Sample D Male 15.3
Substantia nigra
nTPM: 20.2
Samples: 4

Max nTPM: 23.9
Min nTPM: 17.5
Sample A Female 19.1
Sample B Female 20.4
Sample C Male 23.9
Sample D Male 17.5
Superior colliculi
nTPM: 23.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 25.1
Sample C Male 27.2
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.0
Sample A Male 21.2
Sample B Male 22.0
Sample C Female 20.0
Sample D Female 22.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
68844092 Antisense, RP_050217_02_H05, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.