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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.0 nTPM
HPA:74.0 nTPM
GTEx:74.9 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:57.3 nTPM
Mouse:196.8 nTPM
Allen mouse:22.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.3
2586 Male, age 75, left hemisphere 89.0
2666 Male, age 74, left hemisphere 86.9
1827 Male, age 72, unknown 76.3
1870 Female, age 42, unknown 69.5
2411 Female, age 72, unknown 68.6
2828 Female, age 72, unknown 67.6
2219 Male, age 76, both hemispheres 65.8
1830 Male, age 51, unknown 64.1
1833 Male, age 53, unknown 63.9
2019 Male, age 18, unknown 61.7
Dorsal raphe nucleus
nTPM: 69.4
2047 Male, age 72, unknown 76.8
2298 Female, age 72, unknown 70.3
2750 Male, age 76, both hemispheres 68.7
2016 Female, age 72, unknown 66.9
1828 Male, age 53, unknown 64.1
Inferior colliculus
nTPM: 72.0
2849 Male, age 72, unknown 77.5
1848 Female, age 42, unknown 74.6
2097 Female, age 72, unknown 73.9
1890 Male, age 53, unknown 62.0
Median raphe nucleus
nTPM: 72.6
2220 Male, age 76, midline 72.6
Pedunculopontine tegmental nucleus
nTPM: 70.5
2334 Male, age 80, both hemispheres 72.2
1921 Female, age 85, both hemispheres 71.8
2338 Male, age 61, both hemispheres 67.5
Periaquaductal grey, anterior
nTPM: 71.1
1795 Male, age 51, unknown 73.3
1947 Male, age 18, unknown 72.4
2502 Female, age 75, unknown 67.6
Periaquaductal grey, dorsal
nTPM: 67.7
1840 Male, age 53, unknown 73.6
2464 Female, age 72, unknown 67.5
2850 Male, age 76, both hemispheres 65.9
1831 Male, age 72, unknown 63.9
Periaquaductal grey, lateral
nTPM: 64.8
2053 Male, age 18, unknown 73.0
2140 Male, age 76, both hemispheres 63.5
2272 Male, age 74, both hemispheres 57.9
Pretectal area
nTPM: 71.3
1816 Male, age 51, unknown 84.1
2825 Male, age 18, unknown 78.2
2007 Male, age 72, unknown 76.4
1817 Female, age 42, unknown 75.3
1944 Female, age 72, unknown 73.7
2224 Female, age 72, unknown 70.1
2667 Female, age 75, unknown 69.1
1815 Male, age 53, unknown 68.6
2407 Male, age 75, both hemispheres 67.7
2316 Male, age 76, right hemisphere 64.5
2273 Male, age 74, both hemispheres 56.5
Red nucleus
nTPM: 65.0
2584 Male, age 75, left hemisphere 79.5
1954 Female, age 42, unknown 70.5
1821 Female, age 72, unknown 69.7
2769 Male, age 72, unknown 63.7
2725 Female, age 75, unknown 63.6
2227 Male, age 72, unknown 63.5
2588 Male, age 74, left hemisphere 62.9
2785 Male, age 18, unknown 62.4
1865 Male, age 51, unknown 61.9
1904 Male, age 53, unknown 61.5
2503 Female, age 72, unknown 61.2
2823 Male, age 76, right hemisphere 60.1
Substantia nigra
nTPM: 74.0
1941 Male, age 53, unknown 107.6
2583 Male, age 75, right hemisphere 79.3
1889 Female, age 72, unknown 73.3
2665 Male, age 74, both hemispheres 71.5
1916 Female, age 42, unknown 71.3
1851 Male, age 51, unknown 69.4
2409 Female, age 72, unknown 68.4
2699 Male, age 18, unknown 67.3
2590 Female, age 75, unknown 67.0
2241 Male, age 72, unknown 65.1
Superior colliculus
nTPM: 70.8
2668 Female, age 75, unknown 84.7
2664 Male, age 75, both hemispheres 74.5
1895 Male, age 76, right hemisphere 73.0
1839 Male, age 51, unknown 72.2
1796 Male, age 53, unknown 71.1
2087 Female, age 72, unknown 71.1
2261 Male, age 18, unknown 70.9
2587 Male, age 74, left hemisphere 65.2
1913 Female, age 42, unknown 62.9
1995 Male, age 72, unknown 62.6
Ventral tegmental area
nTPM: 69.2
1915 Female, age 42, unknown 73.8
2410 Female, age 72, unknown 71.8
2218 Male, age 76, both hemispheres 69.7
2021 Male, age 53, unknown 68.4
1942 Male, age 51, unknown 67.4
2223 Female, age 72, unknown 64.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.9
Samples: 139

Max nTPM: 483.7
Min nTPM: 30.8
Std nTPM: 50.5
Median nTPM: 65.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 483.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 291.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 287.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 186.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 153.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 134.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 134.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 128.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 127.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 120.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 118.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.3
Pig sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 94.8
Min nTPM: 39.0
Sample A Female 39.0
Sample B Female 40.6
Sample C Male 54.7
Sample D Male 94.8
Periaqueductal gray
nTPM: 40.7
Samples: 3

Max nTPM: 46.5
Min nTPM: 34.6
Sample B Female 40.9
Sample C Male 46.5
Sample D Male 34.6
Substantia nigra
nTPM: 42.3
Samples: 4

Max nTPM: 62.3
Min nTPM: 23.0
Sample A Female 53.5
Sample B Female 30.5
Sample C Male 62.3
Sample D Male 23.0
Superior colliculi
nTPM: 51.9
Samples: 4

Max nTPM: 66.8
Min nTPM: 37.6
Sample A Female 66.8
Sample B Female 37.6
Sample C Male 46.7
Sample D Male 56.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 196.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.8
Samples: 4

Max nTPM: 205.6
Min nTPM: 188.2
Sample A Male 188.2
Sample B Male 194.0
Sample C Female 205.6
Sample D Female 199.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.1
67815971 Antisense, RP_040920_02_E04, Mouse strain C57BL/6J (56 days, male) 22.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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