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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:175.4 nTPM
HPA:175.4 nTPM
GTEx:122.2 nTPM
FANTOM5:171.7 Scaled Tags Per Million
Pig:270.4 nTPM
Mouse:417.1 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 175.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.9
1827 Male, age 72, unknown 176.5
2411 Female, age 72, unknown 174.8
2219 Male, age 76, both hemispheres 161.8
2019 Male, age 18, unknown 158.8
1870 Female, age 42, unknown 157.7
2666 Male, age 74, left hemisphere 153.3
1833 Male, age 53, unknown 151.7
2828 Female, age 72, unknown 151.5
1830 Male, age 51, unknown 149.2
2586 Male, age 75, left hemisphere 134.0
Dorsal raphe nucleus
nTPM: 158.0
2298 Female, age 72, unknown 179.2
2750 Male, age 76, both hemispheres 166.4
2047 Male, age 72, unknown 153.4
1828 Male, age 53, unknown 151.1
2016 Female, age 72, unknown 140.0
Inferior colliculus
nTPM: 157.2
2097 Female, age 72, unknown 179.4
1848 Female, age 42, unknown 154.7
1890 Male, age 53, unknown 148.5
2849 Male, age 72, unknown 146.3
Median raphe nucleus
nTPM: 175.4
2220 Male, age 76, midline 175.4
Pedunculopontine tegmental nucleus
nTPM: 168.7
1921 Female, age 85, both hemispheres 173.0
2334 Male, age 80, both hemispheres 171.1
2338 Male, age 61, both hemispheres 162.2
Periaquaductal grey, anterior
nTPM: 171.0
1947 Male, age 18, unknown 175.6
2502 Female, age 75, unknown 168.7
1795 Male, age 51, unknown 168.6
Periaquaductal grey, dorsal
nTPM: 153.8
2464 Female, age 72, unknown 157.3
1831 Male, age 72, unknown 156.2
1840 Male, age 53, unknown 156.2
2850 Male, age 76, both hemispheres 145.7
Periaquaductal grey, lateral
nTPM: 154.8
2272 Male, age 74, both hemispheres 165.9
2053 Male, age 18, unknown 158.6
2140 Male, age 76, both hemispheres 139.8
Pretectal area
nTPM: 174.7
1816 Male, age 51, unknown 211.3
1944 Female, age 72, unknown 201.0
1817 Female, age 42, unknown 191.5
1815 Male, age 53, unknown 185.9
2007 Male, age 72, unknown 185.8
2224 Female, age 72, unknown 171.8
2273 Male, age 74, both hemispheres 164.7
2667 Female, age 75, unknown 158.8
2825 Male, age 18, unknown 154.3
2407 Male, age 75, both hemispheres 149.9
2316 Male, age 76, right hemisphere 147.2
Red nucleus
nTPM: 147.2
1821 Female, age 72, unknown 163.4
2725 Female, age 75, unknown 158.9
2785 Male, age 18, unknown 152.9
1954 Female, age 42, unknown 150.2
2503 Female, age 72, unknown 149.4
1904 Male, age 53, unknown 145.5
2584 Male, age 75, left hemisphere 142.5
2227 Male, age 72, unknown 141.9
2588 Male, age 74, left hemisphere 141.4
1865 Male, age 51, unknown 140.1
2823 Male, age 76, right hemisphere 140.1
2769 Male, age 72, unknown 139.7
Substantia nigra
nTPM: 162.7
1889 Female, age 72, unknown 178.0
1941 Male, age 53, unknown 177.4
1916 Female, age 42, unknown 175.8
2241 Male, age 72, unknown 165.2
1851 Male, age 51, unknown 164.4
2409 Female, age 72, unknown 160.6
2590 Female, age 75, unknown 158.3
2665 Male, age 74, both hemispheres 155.0
2583 Male, age 75, right hemisphere 147.2
2699 Male, age 18, unknown 145.1
Superior colliculus
nTPM: 162.8
2087 Female, age 72, unknown 181.3
2261 Male, age 18, unknown 181.0
1796 Male, age 53, unknown 168.7
2668 Female, age 75, unknown 166.7
1895 Male, age 76, right hemisphere 161.5
2587 Male, age 74, left hemisphere 160.0
1913 Female, age 42, unknown 158.7
1995 Male, age 72, unknown 156.2
1839 Male, age 51, unknown 155.0
2664 Male, age 75, both hemispheres 138.6
Ventral tegmental area
nTPM: 164.4
2218 Male, age 76, both hemispheres 177.2
2410 Female, age 72, unknown 176.0
1915 Female, age 42, unknown 165.4
1942 Male, age 51, unknown 158.7
2223 Female, age 72, unknown 157.7
2021 Male, age 53, unknown 151.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.2
Samples: 139

Max nTPM: 314.1
Min nTPM: 62.3
Std nTPM: 39.0
Median nTPM: 110.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 314.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 276.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 217.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 214.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 204.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 197.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 194.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 194.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 192.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 192.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 191.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.7
FF:10158-103A5 76 years, female 171.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 270.4
Pig sample Sample description nTPM
Midbrain
nTPM: 270.4
Samples: 4

Max nTPM: 380.8
Min nTPM: 204.4
Sample A Female 226.7
Sample B Female 204.4
Sample C Male 380.8
Sample D Male 269.5
Periaqueductal gray
nTPM: 194.8
Samples: 3

Max nTPM: 231.9
Min nTPM: 172.5
Sample B Female 180.1
Sample C Male 231.9
Sample D Male 172.5
Substantia nigra
nTPM: 236.8
Samples: 4

Max nTPM: 315.9
Min nTPM: 144.2
Sample A Female 315.9
Sample B Female 190.1
Sample C Male 296.9
Sample D Male 144.2
Superior colliculi
nTPM: 267.7
Samples: 4

Max nTPM: 322.0
Min nTPM: 198.8
Sample A Female 286.6
Sample B Female 198.8
Sample C Male 322.0
Sample D Male 263.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 417.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 417.1
Samples: 4

Max nTPM: 429.7
Min nTPM: 405.1
Sample A Male 405.1
Sample B Male 420.3
Sample C Female 429.7
Sample D Female 413.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
70919836 Antisense, RP_050713_02_B06, Mouse strain C57BL/6J (56 days, male) 8.4
2738 Antisense, RP_Baylor_103195, Mouse strain C57BL/6J (56 days, male) 7.2
2737 Antisense, RP_Baylor_103195, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.