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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.5 nTPM
HPA:65.5 nTPM
GTEx:42.7 nTPM
FANTOM5:96.5 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:24.9 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.8
2586 Male, age 75, left hemisphere 67.0
2666 Male, age 74, left hemisphere 66.3
2411 Female, age 72, unknown 64.5
1827 Male, age 72, unknown 63.7
2019 Male, age 18, unknown 60.5
2828 Female, age 72, unknown 60.3
1870 Female, age 42, unknown 59.8
2219 Male, age 76, both hemispheres 59.7
1833 Male, age 53, unknown 58.4
1830 Male, age 51, unknown 57.5
Dorsal raphe nucleus
nTPM: 63.8
2047 Male, age 72, unknown 69.0
2298 Female, age 72, unknown 65.9
2750 Male, age 76, both hemispheres 63.8
1828 Male, age 53, unknown 62.4
2016 Female, age 72, unknown 57.8
Inferior colliculus
nTPM: 59.9
2097 Female, age 72, unknown 63.5
1890 Male, age 53, unknown 59.8
1848 Female, age 42, unknown 59.3
2849 Male, age 72, unknown 57.1
Median raphe nucleus
nTPM: 65.0
2220 Male, age 76, midline 65.0
Pedunculopontine tegmental nucleus
nTPM: 60.8
1921 Female, age 85, both hemispheres 64.1
2334 Male, age 80, both hemispheres 62.6
2338 Male, age 61, both hemispheres 55.8
Periaquaductal grey, anterior
nTPM: 64.5
1947 Male, age 18, unknown 66.6
1795 Male, age 51, unknown 65.2
2502 Female, age 75, unknown 61.6
Periaquaductal grey, dorsal
nTPM: 58.8
2850 Male, age 76, both hemispheres 60.0
1840 Male, age 53, unknown 59.9
1831 Male, age 72, unknown 58.0
2464 Female, age 72, unknown 57.3
Periaquaductal grey, lateral
nTPM: 60.1
2053 Male, age 18, unknown 61.9
2140 Male, age 76, both hemispheres 59.5
2272 Male, age 74, both hemispheres 58.9
Pretectal area
nTPM: 63.0
1816 Male, age 51, unknown 69.2
2007 Male, age 72, unknown 68.0
1817 Female, age 42, unknown 65.4
1944 Female, age 72, unknown 64.8
2407 Male, age 75, both hemispheres 64.0
1815 Male, age 53, unknown 63.9
2667 Female, age 75, unknown 61.1
2224 Female, age 72, unknown 60.5
2825 Male, age 18, unknown 60.2
2273 Male, age 74, both hemispheres 58.8
2316 Male, age 76, right hemisphere 57.7
Red nucleus
nTPM: 60.1
2588 Male, age 74, left hemisphere 64.1
2725 Female, age 75, unknown 63.3
1821 Female, age 72, unknown 61.6
1954 Female, age 42, unknown 61.0
2584 Male, age 75, left hemisphere 60.5
2785 Male, age 18, unknown 60.3
1904 Male, age 53, unknown 59.4
2769 Male, age 72, unknown 58.6
1865 Male, age 51, unknown 58.4
2823 Male, age 76, right hemisphere 58.4
2227 Male, age 72, unknown 58.0
2503 Female, age 72, unknown 57.5
Substantia nigra
nTPM: 65.5
1916 Female, age 42, unknown 73.6
1889 Female, age 72, unknown 70.8
1851 Male, age 51, unknown 69.7
1941 Male, age 53, unknown 67.3
2241 Male, age 72, unknown 65.3
2409 Female, age 72, unknown 64.6
2583 Male, age 75, right hemisphere 61.1
2665 Male, age 74, both hemispheres 61.1
2699 Male, age 18, unknown 60.8
2590 Female, age 75, unknown 60.6
Superior colliculus
nTPM: 60.8
2668 Female, age 75, unknown 66.2
1796 Male, age 53, unknown 66.1
2261 Male, age 18, unknown 64.1
2087 Female, age 72, unknown 62.1
1895 Male, age 76, right hemisphere 59.8
2587 Male, age 74, left hemisphere 59.3
1839 Male, age 51, unknown 58.6
1995 Male, age 72, unknown 57.7
2664 Male, age 75, both hemispheres 57.3
1913 Female, age 42, unknown 57.1
Ventral tegmental area
nTPM: 65.2
2410 Female, age 72, unknown 70.6
1915 Female, age 42, unknown 70.1
2218 Male, age 76, both hemispheres 64.9
1942 Male, age 51, unknown 63.5
2223 Female, age 72, unknown 61.6
2021 Male, age 53, unknown 60.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.7
Samples: 139

Max nTPM: 90.7
Min nTPM: 22.3
Std nTPM: 12.8
Median nTPM: 40.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 90.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 67.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 67.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 66.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 66.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 63.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 63.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.5
FF:10158-103A5 76 years, female 96.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 20.5
Min nTPM: 13.7
Sample A Female 18.6
Sample B Female 13.7
Sample C Male 20.5
Sample D Male 16.3
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 14.7
Min nTPM: 12.0
Sample B Female 12.7
Sample C Male 14.7
Sample D Male 12.0
Substantia nigra
nTPM: 16.2
Samples: 4

Max nTPM: 20.5
Min nTPM: 13.1
Sample A Female 20.5
Sample B Female 13.3
Sample C Male 17.9
Sample D Male 13.1
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.5
Sample A Female 18.6
Sample B Female 13.5
Sample C Male 17.0
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 25.6
Min nTPM: 24.4
Sample A Male 24.6
Sample B Male 25.1
Sample C Female 24.4
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
76003692 Antisense, RP_060608_03_B06, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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