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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:52.3 nTPM
FANTOM5:132.7 Scaled Tags Per Million
Pig:93.4 nTPM
Mouse:307.3 nTPM
Allen mouse:11.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.2
2289 Male, age 61, right hemisphere 46.9
1857 Female, age 85, left hemisphere 46.0
2290 Female, age 72, unknown 40.9
2846 Female, age 79, unknown 39.4
1781 Male, age 74, unknown 39.2
1854 Male, age 80, left hemisphere 38.5
2288 Male, age 75, left hemisphere 31.8
2481 Female, age 94, left hemisphere 30.5
Claustrum
nTPM: 30.2
2568 Male, age 61, both hemispheres 49.2
2198 Male, age 80, both hemispheres 40.1
2284 Female, age 91, both hemispheres 37.8
2491 Male, age 75, both hemispheres 35.6
2196 Female, age 79, unknown 26.4
2392 Female, age 94, both hemispheres 24.7
2645 Female, age 72, unknown 24.0
1956 Male, age 74, unknown 20.5
2292 Female, age 85, both hemispheres 14.0
Globus pallidus, externus
nTPM: 10.5
2646 Male, age 61, right hemisphere 16.0
2567 Female, age 72, unknown 15.8
2395 Male, age 75, both hemispheres 7.9
2772 Female, age 79, unknown 6.5
1996 Male, age 80, right hemisphere 6.2
Globus pallidus, internus
nTPM: 9.8
2483 Female, age 94, right hemisphere 17.6
2566 Female, age 72, unknown 12.7
1818 Male, age 74, unknown 11.3
2287 Male, age 75, right hemisphere 10.1
2037 Male, age 80, right hemisphere 6.8
2778 Female, age 91, both hemispheres 6.2
2111 Female, age 85, right hemisphere 3.7
Nucleus accumbens
nTPM: 35.0
1856 Female, age 91, right hemisphere 56.9
2824 Male, age 61, right hemisphere 46.1
1783 Male, age 74, unknown 43.1
1806 Female, age 85, left hemisphere 41.7
2698 Female, age 72, unknown 32.3
2286 Male, age 75, left hemisphere 31.1
2391 Female, age 94, left hemisphere 17.9
2732 Male, age 80, right hemisphere 11.3
Nucleus basalis of Meynert
nTPM: 28.9
2484 Female, age 94, left hemisphere 40.8
2393 Male, age 80, right hemisphere 31.4
2821 Male, age 75, both hemispheres 23.8
2569 Male, age 61, both hemispheres 19.5
Nucleus of the diagonal band
nTPM: 37.6
2029 Male, age 61, right hemisphere 48.0
2195 Female, age 85, both hemispheres 41.1
1812 Female, age 91, both hemispheres 39.7
2775 Male, age 80, right hemisphere 38.3
1979 Male, age 74, unknown 21.0
Olfactory tubercle
nTPM: 33.7
1998 Female, age 91, both hemispheres 40.4
1846 Male, age 80, right hemisphere 33.7
2856 Male, age 75, right hemisphere 32.5
2487 Female, age 94, left hemisphere 28.3
Putamen
nTPM: 41.8
1838 Male, age 80, right hemisphere 50.9
1937 Female, age 91, right hemisphere 48.7
2647 Male, age 75, left hemisphere 42.6
2466 Female, age 79, unknown 41.0
1829 Male, age 74, unknown 40.8
2489 Female, age 72, unknown 39.3
2482 Female, age 94, left hemisphere 29.5
Septal nuclei
nTPM: 26.6
1960 Male, age 74, unknown 36.8
2059 Female, age 85, both hemispheres 33.9
2009 Female, age 91, both hemispheres 33.5
2629 Female, age 94, right hemisphere 30.4
2031 Female, age 72, unknown 27.8
2394 Male, age 61, left hemisphere 16.1
2199 Male, age 80, right hemisphere 7.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.3
Samples: 246

Max nTPM: 90.1
Min nTPM: 17.2
Std nTPM: 15.7
Median nTPM: 45.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 90.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 86.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 83.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 82.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 82.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 82.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 79.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 78.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 77.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.3
Samples: 246

Max nTPM: 87.2
Min nTPM: 12.7
Std nTPM: 17.7
Median nTPM: 55.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 87.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 86.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 84.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 82.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 80.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 80.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 80.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 80.0
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 79.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 78.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 78.1
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Brain - Putamen (basal ganglia)
Average nTPM: 44.8
Samples: 205

Max nTPM: 87.6
Min nTPM: 12.0
Std nTPM: 15.4
Median nTPM: 43.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 87.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 81.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 79.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 77.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 77.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 77.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 76.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 75.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 75.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 73.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 132.3
FF:10164-103B2 76 years, female 132.3
Globus pallidus
Scaled Tags Per Million: 61.4
FF:10175-103C4 60 years, female 71.0
FF:10161-103A8 76 years, female 51.8
Nucleus accumbens
Scaled Tags Per Million: 132.7
FF:10037-101F1 23-56 years, mixed 132.7
Putamen
Scaled Tags Per Million: 122.3
FF:10176-103C5 60 years, female 122.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 93.4
Pig sample Sample description nTPM
Caudate
nTPM: 93.5
Samples: 4

Max nTPM: 129.3
Min nTPM: 69.6
Sample A Female 69.6
Sample B Female 91.1
Sample C Male 129.3
Sample D Male 83.9
Putamen
nTPM: 80.3
Samples: 4

Max nTPM: 113.3
Min nTPM: 41.9
Sample A Female 41.9
Sample B Female 73.5
Sample C Male 113.3
Sample D Male 92.6
Septum
nTPM: 53.2
Samples: 4

Max nTPM: 76.8
Min nTPM: 31.1
Sample A Female 70.7
Sample B Female 76.8
Sample C Male 31.1
Sample D Male 34.3
Ventral pallidum
nTPM: 66.6
Samples: 4

Max nTPM: 80.3
Min nTPM: 45.9
Sample A Female 80.3
Sample B Female 68.5
Sample C Male 45.9
Sample D Male 71.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 307.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 307.3
Samples: 4

Max nTPM: 324.7
Min nTPM: 296.6
Sample A Male 324.7
Sample B Male 301.1
Sample C Female 296.6
Sample D Female 306.7
Septum
nTPM: 138.7
Samples: 4

Max nTPM: 152.7
Min nTPM: 131.8
Sample A Male 152.7
Sample B Male 134.4
Sample C Female 131.8
Sample D Female 135.8
Ventral forebrain
nTPM: 223.2
Samples: 4

Max nTPM: 234.1
Min nTPM: 214.9
Sample A Male 234.1
Sample B Male 214.9
Sample C Female 228.2
Sample D Female 215.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.9
393201 Antisense, RP_040804_02_C11, Mouse strain C57BL/6J (56 days, male) 11.9
Pallidum
Expression energy: 10.0
393201 Antisense, RP_040804_02_C11, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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