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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.2 nTPM
HPA:41.2 nTPM
GTEx:27.0 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:71.7 nTPM
Mouse:28.2 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.8
2586 Male, age 75, left hemisphere 41.5
2019 Male, age 18, unknown 40.2
2828 Female, age 72, unknown 38.7
1830 Male, age 51, unknown 38.6
1870 Female, age 42, unknown 37.8
1833 Male, age 53, unknown 37.6
2411 Female, age 72, unknown 37.1
2666 Male, age 74, left hemisphere 37.0
1827 Male, age 72, unknown 35.6
2219 Male, age 76, both hemispheres 34.1
Dorsal raphe nucleus
nTPM: 33.5
2750 Male, age 76, both hemispheres 37.8
1828 Male, age 53, unknown 35.7
2047 Male, age 72, unknown 32.5
2016 Female, age 72, unknown 31.5
2298 Female, age 72, unknown 30.0
Inferior colliculus
nTPM: 34.1
1890 Male, age 53, unknown 35.0
1848 Female, age 42, unknown 34.5
2849 Male, age 72, unknown 34.5
2097 Female, age 72, unknown 32.4
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Pedunculopontine tegmental nucleus
nTPM: 34.6
2338 Male, age 61, both hemispheres 35.7
2334 Male, age 80, both hemispheres 34.2
1921 Female, age 85, both hemispheres 34.0
Periaquaductal grey, anterior
nTPM: 34.0
1947 Male, age 18, unknown 35.0
2502 Female, age 75, unknown 34.7
1795 Male, age 51, unknown 32.3
Periaquaductal grey, dorsal
nTPM: 31.4
2464 Female, age 72, unknown 33.9
1831 Male, age 72, unknown 31.6
2850 Male, age 76, both hemispheres 30.3
1840 Male, age 53, unknown 30.0
Periaquaductal grey, lateral
nTPM: 31.6
2053 Male, age 18, unknown 32.1
2140 Male, age 76, both hemispheres 31.4
2272 Male, age 74, both hemispheres 31.4
Pretectal area
nTPM: 34.6
1815 Male, age 53, unknown 36.9
1817 Female, age 42, unknown 36.9
2007 Male, age 72, unknown 36.8
2407 Male, age 75, both hemispheres 36.7
2667 Female, age 75, unknown 36.7
2316 Male, age 76, right hemisphere 34.7
1944 Female, age 72, unknown 34.0
2825 Male, age 18, unknown 33.6
1816 Male, age 51, unknown 33.4
2224 Female, age 72, unknown 30.4
2273 Male, age 74, both hemispheres 30.1
Red nucleus
nTPM: 41.2
1865 Male, age 51, unknown 43.7
2769 Male, age 72, unknown 42.9
2227 Male, age 72, unknown 42.3
1904 Male, age 53, unknown 42.2
1821 Female, age 72, unknown 42.0
2588 Male, age 74, left hemisphere 42.0
2823 Male, age 76, right hemisphere 41.6
1954 Female, age 42, unknown 41.2
2785 Male, age 18, unknown 41.0
2584 Male, age 75, left hemisphere 39.9
2503 Female, age 72, unknown 39.4
2725 Female, age 75, unknown 36.4
Substantia nigra
nTPM: 35.7
2583 Male, age 75, right hemisphere 39.0
1851 Male, age 51, unknown 37.6
2665 Male, age 74, both hemispheres 36.7
1916 Female, age 42, unknown 35.8
1889 Female, age 72, unknown 35.3
2699 Male, age 18, unknown 35.3
2590 Female, age 75, unknown 35.2
2409 Female, age 72, unknown 35.0
1941 Male, age 53, unknown 34.4
2241 Male, age 72, unknown 32.3
Superior colliculus
nTPM: 36.1
1913 Female, age 42, unknown 38.5
2664 Male, age 75, both hemispheres 38.4
1995 Male, age 72, unknown 37.2
2668 Female, age 75, unknown 37.2
1895 Male, age 76, right hemisphere 37.0
1839 Male, age 51, unknown 35.5
2587 Male, age 74, left hemisphere 35.5
1796 Male, age 53, unknown 34.0
2087 Female, age 72, unknown 33.8
2261 Male, age 18, unknown 33.6
Ventral tegmental area
nTPM: 34.8
2223 Female, age 72, unknown 36.5
2410 Female, age 72, unknown 36.4
1915 Female, age 42, unknown 34.7
2218 Male, age 76, both hemispheres 34.5
1942 Male, age 51, unknown 33.7
2021 Male, age 53, unknown 33.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.0
Samples: 139

Max nTPM: 47.9
Min nTPM: 16.9
Std nTPM: 5.4
Median nTPM: 25.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 43.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 41.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 37.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 36.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 35.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 34.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 34.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.5
FF:10158-103A5 76 years, female 51.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.7
Pig sample Sample description nTPM
Midbrain
nTPM: 71.7
Samples: 4

Max nTPM: 97.8
Min nTPM: 53.8
Sample A Female 97.8
Sample B Female 72.1
Sample C Male 53.8
Sample D Male 63.0
Periaqueductal gray
nTPM: 56.4
Samples: 3

Max nTPM: 59.2
Min nTPM: 53.7
Sample B Female 59.2
Sample C Male 56.3
Sample D Male 53.7
Substantia nigra
nTPM: 65.0
Samples: 4

Max nTPM: 74.9
Min nTPM: 52.4
Sample A Female 74.9
Sample B Female 52.4
Sample C Male 64.2
Sample D Male 68.3
Superior colliculi
nTPM: 68.1
Samples: 4

Max nTPM: 81.6
Min nTPM: 51.4
Sample A Female 81.6
Sample B Female 51.4
Sample C Male 64.3
Sample D Male 75.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 31.2
Min nTPM: 24.8
Sample A Male 31.2
Sample B Male 28.0
Sample C Female 24.8
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
70429124 Antisense, RP_050614_01_A08, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.