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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.1 nTPM
HPA:153.1 nTPM
GTEx:67.6 nTPM
FANTOM5:183.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.2
1870 Female, age 42, unknown 150.9
1827 Male, age 72, unknown 150.5
2019 Male, age 18, unknown 149.9
2219 Male, age 76, both hemispheres 149.3
2411 Female, age 72, unknown 148.0
2666 Male, age 74, left hemisphere 147.9
1833 Male, age 53, unknown 146.5
2586 Male, age 75, left hemisphere 146.5
2828 Female, age 72, unknown 146.3
1830 Male, age 51, unknown 146.1
Dorsal raphe nucleus
nTPM: 148.8
2047 Male, age 72, unknown 151.3
2298 Female, age 72, unknown 151.2
1828 Male, age 53, unknown 150.3
2750 Male, age 76, both hemispheres 146.4
2016 Female, age 72, unknown 144.6
Inferior colliculus
nTPM: 152.0
1890 Male, age 53, unknown 153.8
2097 Female, age 72, unknown 152.8
1848 Female, age 42, unknown 151.1
2849 Male, age 72, unknown 150.3
Median raphe nucleus
nTPM: 150.0
2220 Male, age 76, midline 150.0
Pedunculopontine tegmental nucleus
nTPM: 153.1
2338 Male, age 61, both hemispheres 154.3
1921 Female, age 85, both hemispheres 153.1
2334 Male, age 80, both hemispheres 151.9
Periaquaductal grey, anterior
nTPM: 148.6
1947 Male, age 18, unknown 151.2
1795 Male, age 51, unknown 147.9
2502 Female, age 75, unknown 146.7
Periaquaductal grey, dorsal
nTPM: 147.5
2850 Male, age 76, both hemispheres 150.6
1840 Male, age 53, unknown 148.9
1831 Male, age 72, unknown 146.8
2464 Female, age 72, unknown 143.7
Periaquaductal grey, lateral
nTPM: 145.8
2053 Male, age 18, unknown 147.3
2272 Male, age 74, both hemispheres 146.4
2140 Male, age 76, both hemispheres 143.6
Pretectal area
nTPM: 151.4
1817 Female, age 42, unknown 157.9
1816 Male, age 51, unknown 156.5
1944 Female, age 72, unknown 156.2
2007 Male, age 72, unknown 155.1
2667 Female, age 75, unknown 154.4
1815 Male, age 53, unknown 151.2
2224 Female, age 72, unknown 149.5
2825 Male, age 18, unknown 147.5
2407 Male, age 75, both hemispheres 146.4
2316 Male, age 76, right hemisphere 145.9
2273 Male, age 74, both hemispheres 145.0
Red nucleus
nTPM: 149.9
1821 Female, age 72, unknown 156.7
2725 Female, age 75, unknown 152.9
1865 Male, age 51, unknown 151.5
2785 Male, age 18, unknown 151.0
2823 Male, age 76, right hemisphere 150.1
2503 Female, age 72, unknown 149.8
1954 Female, age 42, unknown 149.5
2769 Male, age 72, unknown 148.0
1904 Male, age 53, unknown 147.9
2588 Male, age 74, left hemisphere 147.5
2584 Male, age 75, left hemisphere 147.2
2227 Male, age 72, unknown 146.8
Substantia nigra
nTPM: 151.8
1889 Female, age 72, unknown 159.9
1916 Female, age 42, unknown 155.1
1941 Male, age 53, unknown 152.6
2241 Male, age 72, unknown 152.6
2409 Female, age 72, unknown 152.5
1851 Male, age 51, unknown 151.6
2699 Male, age 18, unknown 150.0
2665 Male, age 74, both hemispheres 149.8
2590 Female, age 75, unknown 148.7
2583 Male, age 75, right hemisphere 145.1
Superior colliculus
nTPM: 149.0
1895 Male, age 76, right hemisphere 154.4
2587 Male, age 74, left hemisphere 153.0
1796 Male, age 53, unknown 150.2
2087 Female, age 72, unknown 150.0
1913 Female, age 42, unknown 148.5
2668 Female, age 75, unknown 147.8
1839 Male, age 51, unknown 147.2
1995 Male, age 72, unknown 146.6
2261 Male, age 18, unknown 146.6
2664 Male, age 75, both hemispheres 146.1
Ventral tegmental area
nTPM: 149.3
2218 Male, age 76, both hemispheres 151.1
2410 Female, age 72, unknown 151.1
1915 Female, age 42, unknown 150.7
2223 Female, age 72, unknown 149.2
1942 Male, age 51, unknown 147.6
2021 Male, age 53, unknown 145.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.6
Samples: 139

Max nTPM: 111.1
Min nTPM: 38.5
Std nTPM: 13.7
Median nTPM: 63.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 111.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 110.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 107.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 105.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 100.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 100.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 95.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 89.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.2
FF:10158-103A5 76 years, female 183.2

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