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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:3.3 nTPM
HPA:3.3 nTPM
GTEx:0.6 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:34.3 nTPM
Allen mouse:2.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040593Antibody HPA040902
Glial cells MediumNot detected
Neuronal cells Not detectedLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2289 Male, age 61, right hemisphere 0.9
1781 Male, age 74, unknown 0.3
1854 Male, age 80, left hemisphere 0.3
2288 Male, age 75, left hemisphere 0.2
1857 Female, age 85, left hemisphere 0.1
2846 Female, age 79, unknown 0.1
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.7
2198 Male, age 80, both hemispheres 1.0
2645 Female, age 72, unknown 0.9
2491 Male, age 75, both hemispheres 0.8
2284 Female, age 91, both hemispheres 0.7
2292 Female, age 85, both hemispheres 0.7
2392 Female, age 94, both hemispheres 0.7
2568 Male, age 61, both hemispheres 0.7
1956 Male, age 74, unknown 0.5
2196 Female, age 79, unknown 0.5
Globus pallidus, externus
nTPM: 0.3
2567 Female, age 72, unknown 0.7
2646 Male, age 61, right hemisphere 0.4
2395 Male, age 75, both hemispheres 0.2
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.3
2778 Female, age 91, both hemispheres 0.8
2111 Female, age 85, right hemisphere 0.5
2566 Female, age 72, unknown 0.4
2287 Male, age 75, right hemisphere 0.3
2037 Male, age 80, right hemisphere 0.2
1818 Male, age 74, unknown 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.5
2732 Male, age 80, right hemisphere 1.4
2391 Female, age 94, left hemisphere 0.7
2824 Male, age 61, right hemisphere 0.7
1856 Female, age 91, right hemisphere 0.5
1806 Female, age 85, left hemisphere 0.2
2286 Male, age 75, left hemisphere 0.2
2698 Female, age 72, unknown 0.1
1783 Male, age 74, unknown 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2393 Male, age 80, right hemisphere 0.5
2821 Male, age 75, both hemispheres 0.2
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 2.6
1979 Male, age 74, unknown 8.6
2775 Male, age 80, right hemisphere 1.4
2195 Female, age 85, both hemispheres 1.2
2029 Male, age 61, right hemisphere 1.1
1812 Female, age 91, both hemispheres 0.8
Olfactory tubercle
nTPM: 1.2
2487 Female, age 94, left hemisphere 2.1
2856 Male, age 75, right hemisphere 1.1
1998 Female, age 91, both hemispheres 0.8
1846 Male, age 80, right hemisphere 0.7
Putamen
nTPM: 0.1
2482 Female, age 94, left hemisphere 0.3
2489 Female, age 72, unknown 0.3
1937 Female, age 91, right hemisphere 0.1
2647 Male, age 75, left hemisphere 0.1
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
Septal nuclei
nTPM: 3.3
2199 Male, age 80, right hemisphere 9.9
2394 Male, age 61, left hemisphere 5.0
2009 Female, age 91, both hemispheres 1.9
2059 Female, age 85, both hemispheres 1.8
2629 Female, age 94, right hemisphere 1.7
2031 Female, age 72, unknown 1.5
1960 Male, age 74, unknown 1.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 4.5
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 4.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 11.8
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 11.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 4.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 4.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 2.7
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 2.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 2.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 2.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 2.0
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 1.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 1.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 1.4
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 0.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 0.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 0.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 0.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 0.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 0.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.3
FF:10164-103B2 76 years, female 0.3
Globus pallidus
Scaled Tags Per Million: 0.8
FF:10175-103C4 60 years, female 1.5
FF:10161-103A8 76 years, female 0.1
Nucleus accumbens
Scaled Tags Per Million: 2.3
FF:10037-101F1 23-56 years, mixed 2.3
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.5
Pig sample Sample description nTPM
Caudate
nTPM: 1.5
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.2
Sample A Female 1.6
Sample B Female 2.1
Sample C Male 1.2
Sample D Male 1.2
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.6
Sample C Male 1.1
Sample D Male 1.0
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 18.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.4
Sample C Male 1.5
Sample D Male 18.8
Ventral pallidum
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.9
Sample A Female 1.2
Sample B Female 0.9
Sample C Male 1.1
Sample D Male 0.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 34.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.1
Samples: 4

Max nTPM: 14.8
Min nTPM: 13.4
Sample A Male 14.2
Sample B Male 14.1
Sample C Female 13.4
Sample D Female 14.8
Septum
nTPM: 34.3
Samples: 4

Max nTPM: 41.3
Min nTPM: 26.1
Sample A Male 26.1
Sample B Male 41.3
Sample C Female 29.1
Sample D Female 40.7
Ventral forebrain
nTPM: 13.6
Samples: 4

Max nTPM: 19.0
Min nTPM: 10.4
Sample A Male 19.0
Sample B Male 12.3
Sample C Female 12.8
Sample D Female 10.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
73592538 Antisense, RP_051017_01_F03, Mouse strain C57BL/6J (56 days, male) 4.1
69134367 Antisense, RP_050321_02_H03, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.4
73592538 Antisense, RP_051017_01_F03, Mouse strain C57BL/6J (56 days, male) 2.8
69134367 Antisense, RP_050321_02_H03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.