ABOUTMENU
HELP
NEWS
ACAA2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.4 nTPM
HPA:61.4 nTPM
GTEx:77.4 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:32.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.3
1870 Female, age 42, unknown 61.4
2828 Female, age 72, unknown 60.8
1833 Male, age 53, unknown 58.3
2586 Male, age 75, left hemisphere 57.9
1827 Male, age 72, unknown 57.6
2411 Female, age 72, unknown 57.4
2666 Male, age 74, left hemisphere 56.1
2019 Male, age 18, unknown 55.7
1830 Male, age 51, unknown 55.4
2219 Male, age 76, both hemispheres 52.7
Dorsal raphe nucleus
nTPM: 61.4
2016 Female, age 72, unknown 63.9
1828 Male, age 53, unknown 63.2
2298 Female, age 72, unknown 60.8
2047 Male, age 72, unknown 60.2
2750 Male, age 76, both hemispheres 59.1
Inferior colliculus
nTPM: 60.4
1848 Female, age 42, unknown 61.0
2097 Female, age 72, unknown 60.9
1890 Male, age 53, unknown 60.4
2849 Male, age 72, unknown 59.1
Median raphe nucleus
nTPM: 56.4
2220 Male, age 76, midline 56.4
Pedunculopontine tegmental nucleus
nTPM: 55.8
2338 Male, age 61, both hemispheres 56.4
2334 Male, age 80, both hemispheres 55.7
1921 Female, age 85, both hemispheres 55.3
Periaquaductal grey, anterior
nTPM: 57.3
2502 Female, age 75, unknown 58.2
1795 Male, age 51, unknown 57.2
1947 Male, age 18, unknown 56.4
Periaquaductal grey, dorsal
nTPM: 61.4
1840 Male, age 53, unknown 65.1
2850 Male, age 76, both hemispheres 63.0
2464 Female, age 72, unknown 59.3
1831 Male, age 72, unknown 58.1
Periaquaductal grey, lateral
nTPM: 59.2
2053 Male, age 18, unknown 62.2
2140 Male, age 76, both hemispheres 62.0
2272 Male, age 74, both hemispheres 53.6
Pretectal area
nTPM: 58.5
2667 Female, age 75, unknown 61.8
1817 Female, age 42, unknown 60.7
1816 Male, age 51, unknown 60.2
2316 Male, age 76, right hemisphere 59.8
2224 Female, age 72, unknown 59.7
2825 Male, age 18, unknown 59.3
1815 Male, age 53, unknown 59.0
1944 Female, age 72, unknown 58.7
2273 Male, age 74, both hemispheres 55.7
2007 Male, age 72, unknown 55.0
2407 Male, age 75, both hemispheres 53.4
Red nucleus
nTPM: 61.0
1821 Female, age 72, unknown 64.5
1954 Female, age 42, unknown 64.5
2227 Male, age 72, unknown 64.0
2503 Female, age 72, unknown 63.7
1904 Male, age 53, unknown 63.1
2769 Male, age 72, unknown 63.1
2823 Male, age 76, right hemisphere 61.8
2588 Male, age 74, left hemisphere 60.0
1865 Male, age 51, unknown 59.8
2725 Female, age 75, unknown 57.7
2785 Male, age 18, unknown 57.0
2584 Male, age 75, left hemisphere 53.1
Substantia nigra
nTPM: 58.4
2699 Male, age 18, unknown 64.1
1851 Male, age 51, unknown 59.7
2665 Male, age 74, both hemispheres 59.7
1916 Female, age 42, unknown 59.6
2241 Male, age 72, unknown 58.9
1889 Female, age 72, unknown 58.8
2590 Female, age 75, unknown 58.3
2409 Female, age 72, unknown 57.1
2583 Male, age 75, right hemisphere 56.6
1941 Male, age 53, unknown 51.8
Superior colliculus
nTPM: 58.6
1995 Male, age 72, unknown 61.5
1839 Male, age 51, unknown 60.5
2587 Male, age 74, left hemisphere 59.8
1913 Female, age 42, unknown 59.6
1895 Male, age 76, right hemisphere 58.7
2664 Male, age 75, both hemispheres 58.6
2087 Female, age 72, unknown 57.8
2668 Female, age 75, unknown 57.0
1796 Male, age 53, unknown 56.1
2261 Male, age 18, unknown 55.8
Ventral tegmental area
nTPM: 58.4
2410 Female, age 72, unknown 60.3
2021 Male, age 53, unknown 60.1
1915 Female, age 42, unknown 59.6
2223 Female, age 72, unknown 58.1
1942 Male, age 51, unknown 56.2
2218 Male, age 76, both hemispheres 56.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.4
Samples: 139

Max nTPM: 243.3
Min nTPM: 14.8
Std nTPM: 32.9
Median nTPM: 71.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 243.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 181.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 169.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 165.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 149.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 139.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 134.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 130.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 129.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 127.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 8.1
Sample A Female 23.4
Sample B Female 12.4
Sample C Male 8.6
Sample D Male 8.1
Periaqueductal gray
nTPM: 13.0
Samples: 3

Max nTPM: 13.4
Min nTPM: 12.4
Sample B Female 13.3
Sample C Male 13.4
Sample D Male 12.4
Substantia nigra
nTPM: 13.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.7
Sample A Female 15.3
Sample B Female 12.0
Sample C Male 11.7
Sample D Male 13.5
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.0
Sample A Female 11.5
Sample B Female 13.5
Sample C Male 12.1
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 35.3
Min nTPM: 29.7
Sample A Male 35.3
Sample B Male 30.6
Sample C Female 29.7
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70528169 Antisense, RP_050623_02_A04, Mouse strain C57BL/6J (56 days, male) 0.2
71924375 Antisense, RP_050623_02_A04, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.