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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.8 nTPM
HPA:56.8 nTPM
GTEx:57.3 nTPM
FANTOM5:256.4 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:54.7 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.8
2411 Female, age 72, unknown 53.3
2219 Male, age 76, both hemispheres 51.7
2019 Male, age 18, unknown 51.6
1833 Male, age 53, unknown 50.9
1870 Female, age 42, unknown 49.4
1830 Male, age 51, unknown 48.6
2828 Female, age 72, unknown 47.3
2586 Male, age 75, left hemisphere 45.1
1827 Male, age 72, unknown 45.0
2666 Male, age 74, left hemisphere 44.7
Dorsal raphe nucleus
nTPM: 47.8
2750 Male, age 76, both hemispheres 57.6
1828 Male, age 53, unknown 48.7
2047 Male, age 72, unknown 45.1
2298 Female, age 72, unknown 44.8
2016 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 45.8
2849 Male, age 72, unknown 47.3
1848 Female, age 42, unknown 46.9
1890 Male, age 53, unknown 45.5
2097 Female, age 72, unknown 43.6
Median raphe nucleus
nTPM: 52.7
2220 Male, age 76, midline 52.7
Pedunculopontine tegmental nucleus
nTPM: 50.9
2334 Male, age 80, both hemispheres 53.2
2338 Male, age 61, both hemispheres 51.9
1921 Female, age 85, both hemispheres 47.8
Periaquaductal grey, anterior
nTPM: 42.7
1947 Male, age 18, unknown 43.7
2502 Female, age 75, unknown 43.0
1795 Male, age 51, unknown 41.4
Periaquaductal grey, dorsal
nTPM: 40.4
2464 Female, age 72, unknown 47.5
1840 Male, age 53, unknown 39.3
1831 Male, age 72, unknown 39.1
2850 Male, age 76, both hemispheres 35.8
Periaquaductal grey, lateral
nTPM: 41.5
2272 Male, age 74, both hemispheres 48.1
2053 Male, age 18, unknown 39.6
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 46.8
2667 Female, age 75, unknown 52.5
1817 Female, age 42, unknown 51.0
2007 Male, age 72, unknown 50.6
1815 Male, age 53, unknown 48.6
1816 Male, age 51, unknown 46.8
2316 Male, age 76, right hemisphere 46.0
1944 Female, age 72, unknown 45.5
2224 Female, age 72, unknown 45.0
2273 Male, age 74, both hemispheres 44.8
2825 Male, age 18, unknown 43.6
2407 Male, age 75, both hemispheres 40.3
Red nucleus
nTPM: 56.8
2503 Female, age 72, unknown 61.8
2769 Male, age 72, unknown 61.4
1821 Female, age 72, unknown 60.3
2227 Male, age 72, unknown 60.1
2823 Male, age 76, right hemisphere 58.9
2785 Male, age 18, unknown 57.2
2588 Male, age 74, left hemisphere 57.0
2725 Female, age 75, unknown 56.0
1865 Male, age 51, unknown 55.3
1904 Male, age 53, unknown 54.7
1954 Female, age 42, unknown 52.2
2584 Male, age 75, left hemisphere 46.6
Substantia nigra
nTPM: 48.5
1916 Female, age 42, unknown 60.0
1851 Male, age 51, unknown 54.5
2699 Male, age 18, unknown 52.5
1889 Female, age 72, unknown 50.5
1941 Male, age 53, unknown 50.1
2409 Female, age 72, unknown 46.7
2590 Female, age 75, unknown 45.6
2583 Male, age 75, right hemisphere 44.3
2241 Male, age 72, unknown 41.5
2665 Male, age 74, both hemispheres 38.6
Superior colliculus
nTPM: 45.4
1895 Male, age 76, right hemisphere 50.7
1913 Female, age 42, unknown 48.6
1995 Male, age 72, unknown 47.8
2587 Male, age 74, left hemisphere 47.7
1796 Male, age 53, unknown 46.9
1839 Male, age 51, unknown 46.0
2087 Female, age 72, unknown 46.0
2668 Female, age 75, unknown 42.3
2261 Male, age 18, unknown 42.0
2664 Male, age 75, both hemispheres 35.8
Ventral tegmental area
nTPM: 49.7
2223 Female, age 72, unknown 53.5
2218 Male, age 76, both hemispheres 52.6
1915 Female, age 42, unknown 52.2
2410 Female, age 72, unknown 51.9
1942 Male, age 51, unknown 45.0
2021 Male, age 53, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.3
Samples: 139

Max nTPM: 106.3
Min nTPM: 27.3
Std nTPM: 15.6
Median nTPM: 54.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 106.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 104.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 103.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 102.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 88.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 87.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 85.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 84.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 82.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 82.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 82.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 256.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 256.4
FF:10158-103A5 76 years, female 256.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.5
Pig sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.4
Sample A Female 11.5
Sample B Female 8.4
Sample C Male 10.4
Sample D Male 11.6
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 7.8
Min nTPM: 7.0
Sample B Female 7.3
Sample C Male 7.8
Sample D Male 7.0
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 13.8
Min nTPM: 6.3
Sample A Female 13.8
Sample B Female 7.0
Sample C Male 8.2
Sample D Male 6.3
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 16.0
Min nTPM: 9.5
Sample A Female 16.0
Sample B Female 9.5
Sample C Male 10.6
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 56.2
Min nTPM: 51.4
Sample A Male 55.7
Sample B Male 51.4
Sample C Female 55.7
Sample D Female 56.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69261426 Antisense, RP_050215_01_E09, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.