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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:57.4 nTPM
HPA:57.4 nTPM
GTEx:48.2 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:39.3 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042720
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.4
Sample id Sample description nTPM
Hippocampus
nTPM: 55.9
1898 Male, age 80, left hemisphere 59.3
1855 Male, age 76, left hemisphere 56.7
2148 Female, age 91, left hemisphere 56.3
2621 Female, age 67, right hemisphere 55.8
2529 Female, age 94, left hemisphere 54.0
1911 Female, age 85, right hemisphere 53.2
Dentate gyrus
nTPM: 56.4
2010 Male, age 76, both hemispheres 62.7
2531 Female, age 67, both hemispheres 57.9
2530 Female, age 94, left hemisphere 54.9
1927 Female, age 91, both hemispheres 54.7
2246 Female, age 85, both hemispheres 54.5
2528 Male, age 74, both hemispheres 53.5
Entorhinal gyrus
nTPM: 54.7
2764 Male, age 80, right hemisphere 56.9
2117 Female, age 91, right hemisphere 56.4
2686 Male, age 75, right hemisphere 55.8
2613 Female, age 94, left hemisphere 53.9
1938 Female, age 85, left hemisphere 53.1
1787 Male, age 76, left hemisphere 51.9
Hippocampus, CA1
nTPM: 57.4
2045 Male, age 76, both hemispheres 64.5
2527 Male, age 74, both hemispheres 55.8
2082 Female, age 91, right hemisphere 55.7
2749 Male, age 80, left hemisphere 55.6
1873 Female, age 85, both hemispheres 55.2
Hippocampus, CA2
nTPM: 54.8
1892 Male, age 76, both hemispheres 56.5
1963 Male, age 80, left hemisphere 56.0
2437 Female, age 94, left hemisphere 55.5
1940 Female, age 85, left hemisphere 54.3
2113 Female, age 91, right hemisphere 53.5
2249 Male, age 74, both hemispheres 53.0
Hippocampus, CA3
nTPM: 57.2
2861 Female, age 67, both hemispheres 59.1
1867 Male, age 76, both hemispheres 58.6
2620 Female, age 94, left hemisphere 57.8
1891 Female, age 85, both hemispheres 57.2
2137 Male, age 80, left hemisphere 55.3
2436 Male, age 74, both hemispheres 55.1
Parahippocampal cortex
nTPM: 55.1
2018 Male, age 76, both hemispheres 62.8
2693 Female, age 94, both hemispheres 56.1
1850 Male, age 80, both hemispheres 55.4
2692 Male, age 74, both hemispheres 55.4
2532 Female, age 72, left hemisphere 54.7
2622 Female, age 67, right hemisphere 54.0
2245 Female, age 91, both hemispheres 53.8
1990 Female, age 91, right hemisphere 53.7
1933 Female, age 85, both hemispheres 53.1
2250 Female, age 67, right hemisphere 52.4
Perirhinal gyrus
nTPM: 53.1
1794 Male, age 80, right hemisphere 54.9
1841 Female, age 85, right hemisphere 53.2
1847 Female, age 91, left hemisphere 52.9
2848 Male, age 76, right hemisphere 52.3
2521 Female, age 94, right hemisphere 51.9
Subiculum
nTPM: 56.6
2042 Male, age 76, both hemispheres 59.7
1901 Male, age 80, both hemispheres 58.2
2729 Female, age 91, right hemisphere 56.8
1977 Female, age 85, both hemispheres 56.2
2619 Male, age 74, both hemispheres 56.1
2438 Female, age 94, left hemisphere 52.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.2
Samples: 197

Max nTPM: 76.5
Min nTPM: 25.2
Std nTPM: 9.3
Median nTPM: 48.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 76.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 72.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 72.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 69.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 69.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 69.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 67.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 66.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 65.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 64.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 63.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.5
FF:10169-103B7 60 years, female 46.0
FF:10153-102I9 76 years, female 43.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.0
Sample A Female 3.7
Sample B Female 3.0
Sample C Male 4.2
Sample D Male 3.4
Entorhinal cortex
nTPM: 3.5
Samples: 4

Max nTPM: 3.6
Min nTPM: 3.4
Sample A Female 3.5
Sample B Female 3.4
Sample C Male 3.6
Sample D Male 3.5
Subiculum
nTPM: 3.6
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.4
Sample C Male 3.8
Sample D Male 4.0
Ventral hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 3.4
Sample C Male 4.0
Sample D Male 3.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 39.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.8
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.9
Sample A Male 34.9
Sample B Male 32.3
Sample C Female 39.1
Sample D Female 28.9
Hippocampal formation
nTPM: 39.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 38.5
Sample A Male 39.1
Sample B Male 38.5
Sample C Female 39.7
Sample D Female 39.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
68633152 Antisense, RP_050125_02_E03, Mouse strain C57BL/6J (56 days, male) 1.2

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