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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:7.9 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:3.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.7
1781 Male, age 74, unknown 12.6
2481 Female, age 94, left hemisphere 11.4
1854 Male, age 80, left hemisphere 10.8
2846 Female, age 79, unknown 10.7
2288 Male, age 75, left hemisphere 10.6
2290 Female, age 72, unknown 10.3
2289 Male, age 61, right hemisphere 9.8
1857 Female, age 85, left hemisphere 9.2
Claustrum
nTPM: 10.0
2292 Female, age 85, both hemispheres 12.8
1956 Male, age 74, unknown 10.4
2198 Male, age 80, both hemispheres 10.1
2196 Female, age 79, unknown 9.8
2645 Female, age 72, unknown 9.7
2392 Female, age 94, both hemispheres 9.5
2568 Male, age 61, both hemispheres 9.5
2284 Female, age 91, both hemispheres 9.2
2491 Male, age 75, both hemispheres 9.2
Globus pallidus, externus
nTPM: 12.5
1996 Male, age 80, right hemisphere 13.8
2567 Female, age 72, unknown 12.6
2772 Female, age 79, unknown 12.3
2395 Male, age 75, both hemispheres 11.9
2646 Male, age 61, right hemisphere 11.8
Globus pallidus, internus
nTPM: 12.4
2111 Female, age 85, right hemisphere 13.6
2566 Female, age 72, unknown 13.3
2037 Male, age 80, right hemisphere 13.1
2778 Female, age 91, both hemispheres 12.7
1818 Male, age 74, unknown 12.4
2287 Male, age 75, right hemisphere 11.6
2483 Female, age 94, right hemisphere 10.1
Nucleus accumbens
nTPM: 10.0
2732 Male, age 80, right hemisphere 11.0
2286 Male, age 75, left hemisphere 10.8
2698 Female, age 72, unknown 10.7
1806 Female, age 85, left hemisphere 10.6
1783 Male, age 74, unknown 9.9
2824 Male, age 61, right hemisphere 9.3
1856 Female, age 91, right hemisphere 8.9
2391 Female, age 94, left hemisphere 8.9
Nucleus basalis of Meynert
nTPM: 10.7
2569 Male, age 61, both hemispheres 12.1
2821 Male, age 75, both hemispheres 10.7
2484 Female, age 94, left hemisphere 10.1
2393 Male, age 80, right hemisphere 10.0
Nucleus of the diagonal band
nTPM: 9.2
1979 Male, age 74, unknown 10.2
1812 Female, age 91, both hemispheres 9.9
2195 Female, age 85, both hemispheres 8.9
2029 Male, age 61, right hemisphere 8.8
2775 Male, age 80, right hemisphere 8.2
Olfactory tubercle
nTPM: 8.9
2487 Female, age 94, left hemisphere 9.6
2856 Male, age 75, right hemisphere 9.2
1846 Male, age 80, right hemisphere 8.7
1998 Female, age 91, both hemispheres 8.2
Putamen
nTPM: 10.2
2647 Male, age 75, left hemisphere 10.9
2489 Female, age 72, unknown 10.8
2482 Female, age 94, left hemisphere 10.3
1937 Female, age 91, right hemisphere 10.0
2466 Female, age 79, unknown 10.0
1829 Male, age 74, unknown 9.9
1838 Male, age 80, right hemisphere 9.7
Septal nuclei
nTPM: 9.8
2394 Male, age 61, left hemisphere 11.4
2199 Male, age 80, right hemisphere 10.6
2629 Female, age 94, right hemisphere 10.1
2009 Female, age 91, both hemispheres 9.5
2059 Female, age 85, both hemispheres 9.5
2031 Female, age 72, unknown 9.2
1960 Male, age 74, unknown 8.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.0
Samples: 246

Max nTPM: 24.5
Min nTPM: 1.4
Std nTPM: 3.0
Median nTPM: 6.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 20.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 19.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 17.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 16.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 16.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 13.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 13.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 13.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 13.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 12.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.2
Samples: 246

Max nTPM: 20.4
Min nTPM: 2.2
Std nTPM: 2.8
Median nTPM: 5.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 20.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 15.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 14.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 14.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 14.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 14.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 13.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 13.8
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 13.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 12.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 12.6
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Brain - Putamen (basal ganglia)
Average nTPM: 7.9
Samples: 205

Max nTPM: 22.1
Min nTPM: 2.6
Std nTPM: 3.2
Median nTPM: 7.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 22.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 20.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 18.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 18.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 18.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 17.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 16.8
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 16.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 14.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 13.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.5
FF:10164-103B2 76 years, female 6.5
Globus pallidus
Scaled Tags Per Million: 10.0
FF:10161-103A8 76 years, female 12.2
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 7.1
FF:10037-101F1 23-56 years, mixed 7.1
Putamen
Scaled Tags Per Million: 7.3
FF:10176-103C5 60 years, female 7.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Caudate
nTPM: 5.3
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.2
Sample C Male 6.0
Sample D Male 5.0
Putamen
nTPM: 5.8
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.2
Sample A Female 5.5
Sample B Female 4.2
Sample C Male 6.7
Sample D Male 6.9
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 7.0
Min nTPM: 3.9
Sample A Female 5.4
Sample B Female 3.9
Sample C Male 6.3
Sample D Male 7.0
Ventral pallidum
nTPM: 5.2
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 5.1
Sample C Male 6.2
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.6
Sample A Male 3.7
Sample B Male 3.1
Sample C Female 3.4
Sample D Female 2.6
Septum
nTPM: 3.1
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 3.4
Sample C Female 3.0
Sample D Female 3.1
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.5
Sample A Male 3.7
Sample B Male 2.5
Sample C Female 3.2
Sample D Female 3.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69549610 Antisense, RP_050208_01_E06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69549610 Antisense, RP_050208_01_E06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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