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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.8 nTPM
HPA:54.8 nTPM
GTEx:44.3 nTPM
FANTOM5:9.3 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:13.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.2
2666 Male, age 74, left hemisphere 52.9
2586 Male, age 75, left hemisphere 51.2
1827 Male, age 72, unknown 50.6
1870 Female, age 42, unknown 48.1
2411 Female, age 72, unknown 47.7
2219 Male, age 76, both hemispheres 46.5
1833 Male, age 53, unknown 46.0
1830 Male, age 51, unknown 45.8
2828 Female, age 72, unknown 45.4
2019 Male, age 18, unknown 37.4
Dorsal raphe nucleus
nTPM: 49.8
2298 Female, age 72, unknown 55.3
2047 Male, age 72, unknown 51.7
2750 Male, age 76, both hemispheres 47.7
1828 Male, age 53, unknown 47.5
2016 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 47.7
2097 Female, age 72, unknown 49.9
1848 Female, age 42, unknown 47.3
2849 Male, age 72, unknown 47.3
1890 Male, age 53, unknown 46.3
Median raphe nucleus
nTPM: 52.7
2220 Male, age 76, midline 52.7
Pedunculopontine tegmental nucleus
nTPM: 50.8
1921 Female, age 85, both hemispheres 52.7
2334 Male, age 80, both hemispheres 50.9
2338 Male, age 61, both hemispheres 48.9
Periaquaductal grey, anterior
nTPM: 54.8
1947 Male, age 18, unknown 64.1
1795 Male, age 51, unknown 52.1
2502 Female, age 75, unknown 48.3
Periaquaductal grey, dorsal
nTPM: 46.7
1840 Male, age 53, unknown 53.1
1831 Male, age 72, unknown 45.0
2850 Male, age 76, both hemispheres 44.9
2464 Female, age 72, unknown 43.8
Periaquaductal grey, lateral
nTPM: 46.9
2053 Male, age 18, unknown 49.5
2272 Male, age 74, both hemispheres 45.9
2140 Male, age 76, both hemispheres 45.2
Pretectal area
nTPM: 46.7
2825 Male, age 18, unknown 56.3
2224 Female, age 72, unknown 55.1
2407 Male, age 75, both hemispheres 49.9
2007 Male, age 72, unknown 48.1
2316 Male, age 76, right hemisphere 46.2
1816 Male, age 51, unknown 44.4
1815 Male, age 53, unknown 44.1
1944 Female, age 72, unknown 43.4
2667 Female, age 75, unknown 43.4
1817 Female, age 42, unknown 43.1
2273 Male, age 74, both hemispheres 39.1
Red nucleus
nTPM: 42.3
2584 Male, age 75, left hemisphere 49.2
2588 Male, age 74, left hemisphere 47.2
1821 Female, age 72, unknown 44.0
2725 Female, age 75, unknown 43.6
2503 Female, age 72, unknown 42.6
2227 Male, age 72, unknown 42.4
2769 Male, age 72, unknown 42.3
1954 Female, age 42, unknown 41.1
1904 Male, age 53, unknown 40.0
1865 Male, age 51, unknown 38.6
2785 Male, age 18, unknown 38.3
2823 Male, age 76, right hemisphere 37.8
Substantia nigra
nTPM: 50.6
1916 Female, age 42, unknown 55.3
2590 Female, age 75, unknown 53.7
1851 Male, age 51, unknown 52.6
2665 Male, age 74, both hemispheres 52.6
2241 Male, age 72, unknown 51.8
1941 Male, age 53, unknown 50.9
2583 Male, age 75, right hemisphere 50.4
2699 Male, age 18, unknown 46.4
1889 Female, age 72, unknown 46.0
2409 Female, age 72, unknown 45.9
Superior colliculus
nTPM: 45.6
1839 Male, age 51, unknown 50.0
1895 Male, age 76, right hemisphere 49.2
2261 Male, age 18, unknown 49.2
2668 Female, age 75, unknown 48.2
1796 Male, age 53, unknown 47.8
2664 Male, age 75, both hemispheres 46.7
2587 Male, age 74, left hemisphere 44.8
1913 Female, age 42, unknown 41.1
2087 Female, age 72, unknown 39.6
1995 Male, age 72, unknown 39.3
Ventral tegmental area
nTPM: 52.3
1915 Female, age 42, unknown 56.2
1942 Male, age 51, unknown 55.5
2218 Male, age 76, both hemispheres 52.7
2021 Male, age 53, unknown 51.9
2223 Female, age 72, unknown 48.8
2410 Female, age 72, unknown 48.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.3
Samples: 139

Max nTPM: 129.4
Min nTPM: 10.4
Std nTPM: 23.1
Median nTPM: 39.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 129.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 108.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 103.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 88.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 88.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 88.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 79.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.3
FF:10158-103A5 76 years, female 9.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 11.4
Min nTPM: 5.8
Sample A Female 11.4
Sample B Female 9.9
Sample C Male 5.8
Sample D Male 6.5
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 10.7
Min nTPM: 8.5
Sample B Female 9.2
Sample C Male 10.7
Sample D Male 8.5
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 6.7
Sample A Female 13.5
Sample B Female 11.1
Sample C Male 10.8
Sample D Male 6.7
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 5.3
Sample A Female 11.7
Sample B Female 10.2
Sample C Male 5.3
Sample D Male 6.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.3
Sample A Male 14.1
Sample B Male 15.1
Sample C Female 13.4
Sample D Female 11.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70565264 Antisense, RP_050623_04_F02, Mouse strain C57BL/6J (56 days, male) 1.9
74047774 Antisense, RP_051214_01_H11, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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