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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:58.9 nTPM
HPA:58.9 nTPM
GTEx:53.3 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:24.1 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011101Antibody CAB018969
Glial cells LowLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Hippocampus
nTPM: 47.5
1898 Male, age 80, left hemisphere 55.4
1855 Male, age 76, left hemisphere 51.0
2621 Female, age 67, right hemisphere 46.6
1911 Female, age 85, right hemisphere 44.6
2529 Female, age 94, left hemisphere 44.1
2148 Female, age 91, left hemisphere 43.5
Dentate gyrus
nTPM: 50.0
2530 Female, age 94, left hemisphere 55.7
1927 Female, age 91, both hemispheres 55.1
2010 Male, age 76, both hemispheres 52.7
2246 Female, age 85, both hemispheres 46.1
2531 Female, age 67, both hemispheres 45.3
2528 Male, age 74, both hemispheres 44.8
Entorhinal gyrus
nTPM: 53.4
2613 Female, age 94, left hemisphere 58.4
1787 Male, age 76, left hemisphere 57.4
2764 Male, age 80, right hemisphere 57.4
1938 Female, age 85, left hemisphere 53.1
2117 Female, age 91, right hemisphere 47.9
2686 Male, age 75, right hemisphere 46.1
Hippocampus, CA1
nTPM: 51.5
2749 Male, age 80, left hemisphere 64.5
1873 Female, age 85, both hemispheres 49.9
2082 Female, age 91, right hemisphere 49.5
2045 Male, age 76, both hemispheres 48.0
2527 Male, age 74, both hemispheres 45.6
Hippocampus, CA2
nTPM: 52.3
1892 Male, age 76, both hemispheres 60.9
2437 Female, age 94, left hemisphere 53.7
1963 Male, age 80, left hemisphere 52.9
1940 Female, age 85, left hemisphere 51.8
2113 Female, age 91, right hemisphere 48.2
2249 Male, age 74, both hemispheres 46.0
Hippocampus, CA3
nTPM: 50.1
1867 Male, age 76, both hemispheres 58.4
2137 Male, age 80, left hemisphere 54.5
2436 Male, age 74, both hemispheres 52.3
1891 Female, age 85, both hemispheres 48.2
2620 Female, age 94, left hemisphere 44.4
2861 Female, age 67, both hemispheres 43.0
Parahippocampal cortex
nTPM: 51.6
1850 Male, age 80, both hemispheres 56.9
1990 Female, age 91, right hemisphere 56.4
2018 Male, age 76, both hemispheres 54.0
2250 Female, age 67, right hemisphere 53.6
2693 Female, age 94, both hemispheres 53.0
1933 Female, age 85, both hemispheres 52.6
2245 Female, age 91, both hemispheres 49.5
2532 Female, age 72, left hemisphere 47.9
2692 Male, age 74, both hemispheres 46.1
2622 Female, age 67, right hemisphere 45.6
Perirhinal gyrus
nTPM: 58.9
1847 Female, age 91, left hemisphere 64.4
1794 Male, age 80, right hemisphere 59.4
2521 Female, age 94, right hemisphere 59.0
1841 Female, age 85, right hemisphere 56.0
2848 Male, age 76, right hemisphere 55.6
Subiculum
nTPM: 49.8
1977 Female, age 85, both hemispheres 56.1
1901 Male, age 80, both hemispheres 55.3
2619 Male, age 74, both hemispheres 50.5
2042 Male, age 76, both hemispheres 48.8
2438 Female, age 94, left hemisphere 44.8
2729 Female, age 91, right hemisphere 43.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.3
Samples: 197

Max nTPM: 120.8
Min nTPM: 11.4
Std nTPM: 23.4
Median nTPM: 50.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 120.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 120.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 114.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 101.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 101.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 100.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 100.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 97.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 94.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 93.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 91.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.9
FF:10169-103B7 60 years, female 35.5
FF:10153-102I9 76 years, female 22.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 2.6
Sample A Female 6.2
Sample B Female 4.4
Sample C Male 4.7
Sample D Male 2.6
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.9
Sample A Female 4.1
Sample B Female 2.9
Sample C Male 4.4
Sample D Male 3.4
Subiculum
nTPM: 8.9
Samples: 4

Max nTPM: 12.5
Min nTPM: 5.7
Sample A Female 12.5
Sample B Female 9.8
Sample C Male 7.5
Sample D Male 5.7
Ventral hippocampus
nTPM: 5.3
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.8
Sample A Female 5.2
Sample B Female 5.9
Sample C Male 6.3
Sample D Male 3.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.1
Samples: 4

Max nTPM: 24.5
Min nTPM: 15.1
Sample A Male 15.1
Sample B Male 17.6
Sample C Female 19.1
Sample D Female 24.5
Hippocampal formation
nTPM: 24.1
Samples: 4

Max nTPM: 38.0
Min nTPM: 18.4
Sample A Male 21.2
Sample B Male 18.6
Sample C Female 18.4
Sample D Female 38.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
70565264 Antisense, RP_050623_04_F02, Mouse strain C57BL/6J (56 days, male) 3.7
74047774 Antisense, RP_051214_01_H11, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.