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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA:11.0 nTPM
GTEx:21.1 nTPM
FANTOM5:26.6 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:18.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.0
2828 Female, age 72, unknown 16.1
2666 Male, age 74, left hemisphere 5.7
1827 Male, age 72, unknown 4.6
2586 Male, age 75, left hemisphere 3.9
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 3.7
1795 Male, age 51, unknown 11.2
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 11.0
1816 Male, age 51, unknown 37.8
1944 Female, age 72, unknown 29.0
1817 Female, age 42, unknown 20.5
2007 Male, age 72, unknown 20.5
1815 Male, age 53, unknown 13.5
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.0
2584 Male, age 75, left hemisphere 1.1
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 2.0
2665 Male, age 74, both hemispheres 11.4
1889 Female, age 72, unknown 8.9
1851 Male, age 51, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 5.2
2087 Female, age 72, unknown 21.8
2668 Female, age 75, unknown 10.9
1796 Male, age 53, unknown 9.7
2261 Male, age 18, unknown 8.9
2664 Male, age 75, both hemispheres 0.7
1913 Female, age 42, unknown 0.1
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
Ventral tegmental area
nTPM: 0.0
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0
2223 Female, age 72, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 60.1
Min nTPM: 4.0
Std nTPM: 10.3
Median nTPM: 19.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 60.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 47.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 43.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 39.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 39.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 37.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.6
FF:10158-103A5 76 years, female 26.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.3
Pig sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 29.7
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 7.6
Sample C Male 29.7
Sample D Male 16.6
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 10.8
Min nTPM: 7.3
Sample B Female 7.3
Sample C Male 10.8
Sample D Male 7.6
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 4.5
Sample A Female 11.2
Sample B Female 7.1
Sample C Male 12.2
Sample D Male 4.5
Superior colliculi
nTPM: 12.0
Samples: 4

Max nTPM: 17.5
Min nTPM: 6.9
Sample A Female 10.4
Sample B Female 6.9
Sample C Male 17.5
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.7
Sample A Male 19.4
Sample B Male 17.7
Sample C Female 19.0
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
72001866 Antisense, RP_050915_02_D08, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.