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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		95.915
RNA expressioni
Consensus:79.3 nTPM
HPA:79.3 nTPM
GTEx:105.1 nTPM
FANTOM5:183.7 Scaled Tags Per Million
Pig:82.0 nTPM
Mouse:193.8 nTPM
Allen mouse:13.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039176Antibody CAB072836
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA039176
Hippocampal formation mean intensity 95.915
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 49.084
Molecular layer of the dentate gyrus 33.962
Granular dentate gyrus 95.399
CA1 - oriens layer 34.280
CA1 - pyramidal layer 82.032
CA1 - radiatum layer 40.623
CA2 - oriens layer 31.823
CA2 - pyramidal layer 62.150
CA2 - radiatum layer 40.612
CA3 - oriens layer 38.391
CA3 - pyramidal layer 81.533
CA3 - radiatum layer 45.152
Stratum lucidum 46.496
Lacunosum moleculare 37.749
Subiculum 92.089

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.3
Sample id Sample description nTPM
Hippocampus
nTPM: 66.1
1898 Male, age 80, left hemisphere 82.2
2621 Female, age 67, right hemisphere 72.7
1855 Male, age 76, left hemisphere 65.4
2148 Female, age 91, left hemisphere 60.4
2529 Female, age 94, left hemisphere 58.4
1911 Female, age 85, right hemisphere 57.7
Dentate gyrus
nTPM: 69.3
2530 Female, age 94, left hemisphere 81.9
1927 Female, age 91, both hemispheres 78.8
2010 Male, age 76, both hemispheres 66.6
2246 Female, age 85, both hemispheres 64.0
2531 Female, age 67, both hemispheres 63.1
2528 Male, age 74, both hemispheres 61.3
Entorhinal gyrus
nTPM: 74.4
2613 Female, age 94, left hemisphere 95.4
2764 Male, age 80, right hemisphere 85.3
1938 Female, age 85, left hemisphere 79.3
1787 Male, age 76, left hemisphere 73.5
2686 Male, age 75, right hemisphere 60.0
2117 Female, age 91, right hemisphere 52.9
Hippocampus, CA1
nTPM: 74.9
2749 Male, age 80, left hemisphere 124.3
1873 Female, age 85, both hemispheres 67.0
2527 Male, age 74, both hemispheres 64.8
2045 Male, age 76, both hemispheres 59.3
2082 Female, age 91, right hemisphere 59.2
Hippocampus, CA2
nTPM: 68.8
1892 Male, age 76, both hemispheres 81.2
1963 Male, age 80, left hemisphere 81.0
2437 Female, age 94, left hemisphere 71.7
2249 Male, age 74, both hemispheres 63.6
1940 Female, age 85, left hemisphere 57.9
2113 Female, age 91, right hemisphere 57.6
Hippocampus, CA3
nTPM: 72.6
2137 Male, age 80, left hemisphere 100.6
2620 Female, age 94, left hemisphere 75.6
2861 Female, age 67, both hemispheres 74.9
1867 Male, age 76, both hemispheres 68.5
2436 Male, age 74, both hemispheres 59.6
1891 Female, age 85, both hemispheres 56.3
Parahippocampal cortex
nTPM: 68.7
1850 Male, age 80, both hemispheres 78.1
2245 Female, age 91, both hemispheres 75.8
1990 Female, age 91, right hemisphere 74.9
1933 Female, age 85, both hemispheres 70.1
2693 Female, age 94, both hemispheres 68.9
2532 Female, age 72, left hemisphere 66.5
2250 Female, age 67, right hemisphere 66.0
2622 Female, age 67, right hemisphere 64.5
2692 Male, age 74, both hemispheres 64.2
2018 Male, age 76, both hemispheres 57.8
Perirhinal gyrus
nTPM: 79.3
1847 Female, age 91, left hemisphere 94.5
1794 Male, age 80, right hemisphere 82.7
2521 Female, age 94, right hemisphere 77.7
1841 Female, age 85, right hemisphere 71.4
2848 Male, age 76, right hemisphere 70.0
Subiculum
nTPM: 65.0
2438 Female, age 94, left hemisphere 75.4
1901 Male, age 80, both hemispheres 73.8
1977 Female, age 85, both hemispheres 70.0
2619 Male, age 74, both hemispheres 63.0
2042 Male, age 76, both hemispheres 57.3
2729 Female, age 91, right hemisphere 50.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 105.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 105.1
Samples: 197

Max nTPM: 222.4
Min nTPM: 34.6
Std nTPM: 40.7
Median nTPM: 99.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 222.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 216.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 207.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 204.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 204.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 201.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 200.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 196.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 192.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 186.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 182.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 183.7
FF:10169-103B7 60 years, female 244.8
FF:10153-102I9 76 years, female 122.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 82.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 82.0
Samples: 4

Max nTPM: 110.9
Min nTPM: 64.2
Sample A Female 110.9
Sample B Female 86.3
Sample C Male 66.6
Sample D Male 64.2
Entorhinal cortex
nTPM: 72.7
Samples: 4

Max nTPM: 82.9
Min nTPM: 64.5
Sample A Female 82.9
Sample B Female 68.6
Sample C Male 74.9
Sample D Male 64.5
Subiculum
nTPM: 68.2
Samples: 4

Max nTPM: 86.0
Min nTPM: 60.1
Sample A Female 86.0
Sample B Female 60.1
Sample C Male 66.1
Sample D Male 60.5
Ventral hippocampus
nTPM: 74.9
Samples: 4

Max nTPM: 93.8
Min nTPM: 48.5
Sample A Female 71.4
Sample B Female 48.5
Sample C Male 85.8
Sample D Male 93.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 193.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 165.1
Samples: 4

Max nTPM: 180.1
Min nTPM: 155.5
Sample A Male 157.5
Sample B Male 155.5
Sample C Female 167.1
Sample D Female 180.1
Hippocampal formation
nTPM: 193.8
Samples: 4

Max nTPM: 200.4
Min nTPM: 189.2
Sample A Male 200.4
Sample B Male 189.2
Sample C Female 195.6
Sample D Female 190.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.3
68080680 Antisense, RP_040929_01_D10, Mouse strain C57BL/6J (56 days, male) 13.3

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