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FAM234A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA:37.2 nTPM
GTEx:39.1 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:20.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
1870 Female, age 42, unknown 43.8
1830 Male, age 51, unknown 39.7
2411 Female, age 72, unknown 36.5
2019 Male, age 18, unknown 35.5
1833 Male, age 53, unknown 34.4
2586 Male, age 75, left hemisphere 34.2
2666 Male, age 74, left hemisphere 27.0
2828 Female, age 72, unknown 26.9
1827 Male, age 72, unknown 24.1
2219 Male, age 76, both hemispheres 23.2
Dorsal raphe nucleus
nTPM: 27.5
2750 Male, age 76, both hemispheres 45.2
1828 Male, age 53, unknown 25.7
2047 Male, age 72, unknown 24.5
2016 Female, age 72, unknown 23.3
2298 Female, age 72, unknown 18.7
Inferior colliculus
nTPM: 22.4
1890 Male, age 53, unknown 25.9
1848 Female, age 42, unknown 24.4
2849 Male, age 72, unknown 20.8
2097 Female, age 72, unknown 18.4
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Pedunculopontine tegmental nucleus
nTPM: 31.1
2338 Male, age 61, both hemispheres 33.2
2334 Male, age 80, both hemispheres 31.8
1921 Female, age 85, both hemispheres 28.4
Periaquaductal grey, anterior
nTPM: 23.0
1947 Male, age 18, unknown 25.0
2502 Female, age 75, unknown 23.0
1795 Male, age 51, unknown 20.9
Periaquaductal grey, dorsal
nTPM: 21.6
1831 Male, age 72, unknown 26.5
2464 Female, age 72, unknown 23.5
2850 Male, age 76, both hemispheres 19.7
1840 Male, age 53, unknown 16.9
Periaquaductal grey, lateral
nTPM: 25.2
2053 Male, age 18, unknown 26.5
2272 Male, age 74, both hemispheres 24.9
2140 Male, age 76, both hemispheres 24.1
Pretectal area
nTPM: 24.0
2407 Male, age 75, both hemispheres 29.0
2316 Male, age 76, right hemisphere 27.8
2667 Female, age 75, unknown 27.4
2825 Male, age 18, unknown 25.6
2273 Male, age 74, both hemispheres 24.9
1815 Male, age 53, unknown 24.7
2007 Male, age 72, unknown 22.8
1817 Female, age 42, unknown 22.7
2224 Female, age 72, unknown 20.2
1944 Female, age 72, unknown 19.7
1816 Male, age 51, unknown 18.9
Red nucleus
nTPM: 37.2
1865 Male, age 51, unknown 44.4
2769 Male, age 72, unknown 41.5
2823 Male, age 76, right hemisphere 41.5
2227 Male, age 72, unknown 41.1
2588 Male, age 74, left hemisphere 39.9
2584 Male, age 75, left hemisphere 38.3
1904 Male, age 53, unknown 38.2
1821 Female, age 72, unknown 36.7
2785 Male, age 18, unknown 34.1
1954 Female, age 42, unknown 34.0
2503 Female, age 72, unknown 29.4
2725 Female, age 75, unknown 27.2
Substantia nigra
nTPM: 26.0
2583 Male, age 75, right hemisphere 32.0
2590 Female, age 75, unknown 32.0
1941 Male, age 53, unknown 27.9
1889 Female, age 72, unknown 27.4
1851 Male, age 51, unknown 27.2
2699 Male, age 18, unknown 26.7
2665 Male, age 74, both hemispheres 23.2
2409 Female, age 72, unknown 22.3
1916 Female, age 42, unknown 20.7
2241 Male, age 72, unknown 20.6
Superior colliculus
nTPM: 28.4
1913 Female, age 42, unknown 45.4
1995 Male, age 72, unknown 34.8
2587 Male, age 74, left hemisphere 29.0
1895 Male, age 76, right hemisphere 27.5
2664 Male, age 75, both hemispheres 26.4
2668 Female, age 75, unknown 26.0
1839 Male, age 51, unknown 25.6
2087 Female, age 72, unknown 24.6
1796 Male, age 53, unknown 23.4
2261 Male, age 18, unknown 20.9
Ventral tegmental area
nTPM: 31.1
2223 Female, age 72, unknown 45.6
2021 Male, age 53, unknown 31.2
2218 Male, age 76, both hemispheres 30.1
2410 Female, age 72, unknown 28.8
1942 Male, age 51, unknown 28.4
1915 Female, age 42, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 126.8
Min nTPM: 14.8
Std nTPM: 17.3
Median nTPM: 35.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 126.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 120.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 103.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 84.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 69.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 68.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 67.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 67.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 64.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 57.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 16.1
Min nTPM: 4.9
Sample A Female 16.1
Sample B Female 6.0
Sample C Male 6.4
Sample D Male 4.9
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 6.7
Min nTPM: 6.1
Sample B Female 6.1
Sample C Male 6.7
Sample D Male 6.1
Substantia nigra
nTPM: 8.4
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.6
Sample A Female 7.4
Sample B Female 9.7
Sample C Male 6.6
Sample D Male 9.7
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.8
Sample A Female 8.7
Sample B Female 10.1
Sample C Male 6.8
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.3
Sample A Male 19.3
Sample B Male 18.3
Sample C Female 20.3
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69838432 Antisense, RP_050303_01_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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