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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:18.0 nTPM
FANTOM5:25.6 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:1.2 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA057464
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Hippocampus
nTPM: 14.1
1911 Female, age 85, right hemisphere 15.8
2529 Female, age 94, left hemisphere 15.6
1898 Male, age 80, left hemisphere 13.8
2621 Female, age 67, right hemisphere 13.5
1855 Male, age 76, left hemisphere 13.0
2148 Female, age 91, left hemisphere 12.7
Dentate gyrus
nTPM: 13.9
2528 Male, age 74, both hemispheres 15.8
2010 Male, age 76, both hemispheres 15.4
2530 Female, age 94, left hemisphere 15.2
2246 Female, age 85, both hemispheres 12.7
2531 Female, age 67, both hemispheres 12.2
1927 Female, age 91, both hemispheres 11.9
Entorhinal gyrus
nTPM: 14.2
2117 Female, age 91, right hemisphere 18.7
2764 Male, age 80, right hemisphere 16.1
1787 Male, age 76, left hemisphere 13.3
1938 Female, age 85, left hemisphere 12.4
2613 Female, age 94, left hemisphere 12.4
2686 Male, age 75, right hemisphere 12.3
Hippocampus, CA1
nTPM: 12.9
2527 Male, age 74, both hemispheres 14.1
2082 Female, age 91, right hemisphere 13.9
1873 Female, age 85, both hemispheres 13.3
2749 Male, age 80, left hemisphere 11.7
2045 Male, age 76, both hemispheres 11.4
Hippocampus, CA2
nTPM: 14.5
1940 Female, age 85, left hemisphere 16.9
1963 Male, age 80, left hemisphere 15.9
2249 Male, age 74, both hemispheres 15.4
2113 Female, age 91, right hemisphere 14.4
2437 Female, age 94, left hemisphere 13.0
1892 Male, age 76, both hemispheres 11.2
Hippocampus, CA3
nTPM: 13.1
1891 Female, age 85, both hemispheres 17.5
1867 Male, age 76, both hemispheres 14.3
2436 Male, age 74, both hemispheres 12.3
2620 Female, age 94, left hemisphere 12.3
2137 Male, age 80, left hemisphere 11.9
2861 Female, age 67, both hemispheres 10.3
Parahippocampal cortex
nTPM: 13.3
2692 Male, age 74, both hemispheres 17.1
2018 Male, age 76, both hemispheres 15.3
1990 Female, age 91, right hemisphere 14.8
2532 Female, age 72, left hemisphere 13.9
1850 Male, age 80, both hemispheres 13.8
1933 Female, age 85, both hemispheres 12.8
2245 Female, age 91, both hemispheres 12.0
2693 Female, age 94, both hemispheres 12.0
2250 Female, age 67, right hemisphere 11.1
2622 Female, age 67, right hemisphere 9.9
Perirhinal gyrus
nTPM: 11.5
1794 Male, age 80, right hemisphere 12.4
2521 Female, age 94, right hemisphere 12.2
2848 Male, age 76, right hemisphere 11.3
1847 Female, age 91, left hemisphere 11.1
1841 Female, age 85, right hemisphere 10.4
Subiculum
nTPM: 16.5
2042 Male, age 76, both hemispheres 22.4
1901 Male, age 80, both hemispheres 18.5
2619 Male, age 74, both hemispheres 16.1
2729 Female, age 91, right hemisphere 14.8
1977 Female, age 85, both hemispheres 13.9
2438 Female, age 94, left hemisphere 13.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.0
Samples: 197

Max nTPM: 58.1
Min nTPM: 3.8
Std nTPM: 10.3
Median nTPM: 15.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 58.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 57.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 48.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 43.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 42.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 41.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 41.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 40.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 40.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 40.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 40.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.6
FF:10153-102I9 76 years, female 27.1
FF:10169-103B7 60 years, female 24.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.4
Sample A Female 3.5
Sample B Female 3.7
Sample C Male 4.5
Sample D Male 3.4
Entorhinal cortex
nTPM: 3.2
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.7
Sample A Female 3.4
Sample B Female 2.7
Sample C Male 3.6
Sample D Male 3.2
Subiculum
nTPM: 4.2
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.9
Sample A Female 4.8
Sample B Female 4.5
Sample C Male 4.7
Sample D Male 2.9
Ventral hippocampus
nTPM: 4.0
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 4.6
Sample C Male 4.8
Sample D Male 3.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.1
Sample C Female 1.5
Sample D Female 1.2
Hippocampal formation
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.4
Sample A Male 1.1
Sample B Male 0.9
Sample C Female 0.4
Sample D Female 1.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
70302992 Antisense, RP_050609_01_D02, Mouse strain C57BL/6J (56 days, male) 0.0

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