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RPSA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:809.6 nTPM
HPA:809.6 nTPM
GTEx:955.6 nTPM
FANTOM5:68.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 809.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 804.8
2586 Male, age 75, left hemisphere 865.5
2666 Male, age 74, left hemisphere 836.1
2411 Female, age 72, unknown 809.4
2828 Female, age 72, unknown 804.9
1870 Female, age 42, unknown 804.0
1833 Male, age 53, unknown 795.7
1830 Male, age 51, unknown 788.8
1827 Male, age 72, unknown 787.0
2019 Male, age 18, unknown 781.3
2219 Male, age 76, both hemispheres 775.2
Dorsal raphe nucleus
nTPM: 790.9
2750 Male, age 76, both hemispheres 801.7
1828 Male, age 53, unknown 793.2
2016 Female, age 72, unknown 792.9
2298 Female, age 72, unknown 785.5
2047 Male, age 72, unknown 781.1
Inferior colliculus
nTPM: 785.8
2849 Male, age 72, unknown 789.9
1890 Male, age 53, unknown 788.8
2097 Female, age 72, unknown 783.3
1848 Female, age 42, unknown 781.4
Median raphe nucleus
nTPM: 775.6
2220 Male, age 76, midline 775.6
Pedunculopontine tegmental nucleus
nTPM: 796.3
2338 Male, age 61, both hemispheres 821.4
2334 Male, age 80, both hemispheres 800.4
1921 Female, age 85, both hemispheres 767.1
Periaquaductal grey, anterior
nTPM: 790.9
2502 Female, age 75, unknown 819.3
1795 Male, age 51, unknown 779.2
1947 Male, age 18, unknown 774.2
Periaquaductal grey, dorsal
nTPM: 780.2
1840 Male, age 53, unknown 800.7
2464 Female, age 72, unknown 793.2
1831 Male, age 72, unknown 773.1
2850 Male, age 76, both hemispheres 754.0
Periaquaductal grey, lateral
nTPM: 764.9
2053 Male, age 18, unknown 784.1
2140 Male, age 76, both hemispheres 759.3
2272 Male, age 74, both hemispheres 751.3
Pretectal area
nTPM: 771.3
2825 Male, age 18, unknown 792.9
2407 Male, age 75, both hemispheres 785.4
2316 Male, age 76, right hemisphere 784.1
1815 Male, age 53, unknown 776.1
2007 Male, age 72, unknown 773.8
1816 Male, age 51, unknown 772.3
1817 Female, age 42, unknown 770.9
2224 Female, age 72, unknown 769.1
1944 Female, age 72, unknown 756.3
2667 Female, age 75, unknown 754.9
2273 Male, age 74, both hemispheres 749.0
Red nucleus
nTPM: 807.3
2584 Male, age 75, left hemisphere 838.6
2503 Female, age 72, unknown 830.6
2769 Male, age 72, unknown 817.6
2227 Male, age 72, unknown 816.0
1865 Male, age 51, unknown 811.3
1821 Female, age 72, unknown 810.2
2588 Male, age 74, left hemisphere 809.4
1904 Male, age 53, unknown 807.3
1954 Female, age 42, unknown 797.4
2725 Female, age 75, unknown 788.8
2785 Male, age 18, unknown 786.2
2823 Male, age 76, right hemisphere 774.2
Substantia nigra
nTPM: 809.6
2665 Male, age 74, both hemispheres 839.1
1851 Male, age 51, unknown 836.8
2699 Male, age 18, unknown 830.5
2241 Male, age 72, unknown 821.2
2583 Male, age 75, right hemisphere 811.4
2590 Female, age 75, unknown 802.5
1916 Female, age 42, unknown 801.9
2409 Female, age 72, unknown 801.3
1941 Male, age 53, unknown 776.7
1889 Female, age 72, unknown 774.9
Superior colliculus
nTPM: 793.5
2664 Male, age 75, both hemispheres 840.4
2587 Male, age 74, left hemisphere 808.6
2668 Female, age 75, unknown 807.7
1796 Male, age 53, unknown 791.7
1839 Male, age 51, unknown 789.8
1913 Female, age 42, unknown 788.8
1995 Male, age 72, unknown 786.3
2261 Male, age 18, unknown 783.2
1895 Male, age 76, right hemisphere 770.8
2087 Female, age 72, unknown 767.8
Ventral tegmental area
nTPM: 801.8
1915 Female, age 42, unknown 816.6
2223 Female, age 72, unknown 813.9
2021 Male, age 53, unknown 804.1
2410 Female, age 72, unknown 802.9
1942 Male, age 51, unknown 797.6
2218 Male, age 76, both hemispheres 775.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 955.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 955.6
Samples: 139

Max nTPM: 2941.5
Min nTPM: 384.3
Std nTPM: 356.8
Median nTPM: 895.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2941.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2035.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1977.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1923.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1718.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1690.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1642.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1589.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1504.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1492.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1487.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.1
FF:10158-103A5 76 years, female 68.1

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