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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA:20.8 nTPM
GTEx:25.6 nTPM
FANTOM5:60.4 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:14.4 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.9
2846 Female, age 79, unknown 27.0
2289 Male, age 61, right hemisphere 20.4
2290 Female, age 72, unknown 14.3
1857 Female, age 85, left hemisphere 13.6
1854 Male, age 80, left hemisphere 11.9
2288 Male, age 75, left hemisphere 10.5
1781 Male, age 74, unknown 8.4
2481 Female, age 94, left hemisphere 5.5
Claustrum
nTPM: 2.7
2392 Female, age 94, both hemispheres 4.8
2284 Female, age 91, both hemispheres 4.5
2568 Male, age 61, both hemispheres 3.9
2198 Male, age 80, both hemispheres 3.7
2196 Female, age 79, unknown 2.2
1956 Male, age 74, unknown 1.7
2491 Male, age 75, both hemispheres 1.6
2645 Female, age 72, unknown 1.6
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 2.3
2395 Male, age 75, both hemispheres 3.9
2646 Male, age 61, right hemisphere 3.3
2772 Female, age 79, unknown 2.5
2567 Female, age 72, unknown 1.7
1996 Male, age 80, right hemisphere 0.1
Globus pallidus, internus
nTPM: 1.7
2287 Male, age 75, right hemisphere 2.9
2483 Female, age 94, right hemisphere 2.7
1818 Male, age 74, unknown 2.0
2566 Female, age 72, unknown 1.9
2037 Male, age 80, right hemisphere 1.1
2778 Female, age 91, both hemispheres 0.8
2111 Female, age 85, right hemisphere 0.6
Nucleus accumbens
nTPM: 8.2
2824 Male, age 61, right hemisphere 14.5
1856 Female, age 91, right hemisphere 12.5
1783 Male, age 74, unknown 10.2
1806 Female, age 85, left hemisphere 9.1
2698 Female, age 72, unknown 6.8
2286 Male, age 75, left hemisphere 5.6
2391 Female, age 94, left hemisphere 5.2
2732 Male, age 80, right hemisphere 2.2
Nucleus basalis of Meynert
nTPM: 11.9
2393 Male, age 80, right hemisphere 21.4
2484 Female, age 94, left hemisphere 17.3
2821 Male, age 75, both hemispheres 6.6
2569 Male, age 61, both hemispheres 2.2
Nucleus of the diagonal band
nTPM: 3.7
2775 Male, age 80, right hemisphere 5.0
1812 Female, age 91, both hemispheres 4.1
2029 Male, age 61, right hemisphere 3.8
2195 Female, age 85, both hemispheres 3.7
1979 Male, age 74, unknown 1.7
Olfactory tubercle
nTPM: 4.1
1998 Female, age 91, both hemispheres 4.5
1846 Male, age 80, right hemisphere 4.3
2487 Female, age 94, left hemisphere 4.1
2856 Male, age 75, right hemisphere 3.6
Putamen
nTPM: 20.8
2466 Female, age 79, unknown 38.5
1829 Male, age 74, unknown 34.5
1838 Male, age 80, right hemisphere 23.9
2489 Female, age 72, unknown 19.2
1937 Female, age 91, right hemisphere 16.3
2482 Female, age 94, left hemisphere 7.8
2647 Male, age 75, left hemisphere 5.8
Septal nuclei
nTPM: 3.0
1960 Male, age 74, unknown 4.3
2009 Female, age 91, both hemispheres 4.2
2629 Female, age 94, right hemisphere 3.1
2031 Female, age 72, unknown 3.0
2059 Female, age 85, both hemispheres 2.9
2199 Male, age 80, right hemisphere 1.7
2394 Male, age 61, left hemisphere 1.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.5
Samples: 246

Max nTPM: 90.9
Min nTPM: 0.8
Std nTPM: 17.0
Median nTPM: 19.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 90.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 77.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 75.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 67.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 62.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 61.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 61.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 61.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 60.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 59.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 42.2
Min nTPM: 0.4
Std nTPM: 8.6
Median nTPM: 11.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 42.2
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 41.4
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 39.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 39.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 33.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 33.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 33.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 33.2
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 33.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 32.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 31.3
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Brain - Putamen (basal ganglia)
Average nTPM: 25.6
Samples: 205

Max nTPM: 111.9
Min nTPM: 0.3
Std nTPM: 20.9
Median nTPM: 21.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 111.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 99.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 97.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 84.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 81.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 76.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 70.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 69.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 69.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 67.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 64.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.1
FF:10164-103B2 76 years, female 28.1
Globus pallidus
Scaled Tags Per Million: 33.8
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 8.4
Nucleus accumbens
Scaled Tags Per Million: 60.4
FF:10037-101F1 23-56 years, mixed 60.4
Putamen
Scaled Tags Per Million: 48.1
FF:10176-103C5 60 years, female 48.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Caudate
nTPM: 8.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.8
Sample C Male 9.2
Sample D Male 8.4
Putamen
nTPM: 8.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 7.4
Sample C Male 12.3
Sample D Male 8.2
Septum
nTPM: 9.0
Samples: 4

Max nTPM: 13.9
Min nTPM: 6.6
Sample A Female 8.0
Sample B Female 7.5
Sample C Male 13.9
Sample D Male 6.6
Ventral pallidum
nTPM: 8.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 5.8
Sample A Female 7.5
Sample B Female 6.3
Sample C Male 13.4
Sample D Male 5.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.9
Sample A Male 16.1
Sample B Male 16.0
Sample C Female 12.7
Sample D Female 11.9
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 7.8
Min nTPM: 3.4
Sample A Male 7.8
Sample B Male 3.4
Sample C Female 5.2
Sample D Female 4.0
Ventral forebrain
nTPM: 14.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.0
Sample A Male 14.3
Sample B Male 16.0
Sample C Female 15.2
Sample D Female 12.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69672048 Antisense, RP_050428_02_H07, Mouse strain C57BL/6J (56 days, male) 1.3
74511804 Antisense, RP_060220_03_B01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.7
69672048 Antisense, RP_050428_02_H07, Mouse strain C57BL/6J (56 days, male) 1.3
74511804 Antisense, RP_060220_03_B01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.