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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:103.0 nTPM
HPA:103.0 nTPM
GTEx:113.2 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:197.0 nTPM
Allen mouse:6.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044315
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 103.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 102.4
1857 Female, age 85, left hemisphere 107.2
1854 Male, age 80, left hemisphere 104.3
2290 Female, age 72, unknown 103.7
2288 Male, age 75, left hemisphere 103.3
2846 Female, age 79, unknown 102.3
2481 Female, age 94, left hemisphere 101.1
1781 Male, age 74, unknown 99.7
2289 Male, age 61, right hemisphere 97.5
Claustrum
nTPM: 94.6
2198 Male, age 80, both hemispheres 98.9
2392 Female, age 94, both hemispheres 98.8
1956 Male, age 74, unknown 96.3
2196 Female, age 79, unknown 96.2
2491 Male, age 75, both hemispheres 96.0
2284 Female, age 91, both hemispheres 93.4
2568 Male, age 61, both hemispheres 93.0
2292 Female, age 85, both hemispheres 90.3
2645 Female, age 72, unknown 88.2
Globus pallidus, externus
nTPM: 97.6
2772 Female, age 79, unknown 106.5
2395 Male, age 75, both hemispheres 102.4
1996 Male, age 80, right hemisphere 99.3
2646 Male, age 61, right hemisphere 94.2
2567 Female, age 72, unknown 85.7
Globus pallidus, internus
nTPM: 97.7
2287 Male, age 75, right hemisphere 109.0
2483 Female, age 94, right hemisphere 101.6
2778 Female, age 91, both hemispheres 100.5
1818 Male, age 74, unknown 97.1
2037 Male, age 80, right hemisphere 94.3
2111 Female, age 85, right hemisphere 91.7
2566 Female, age 72, unknown 89.4
Nucleus accumbens
nTPM: 103.0
1856 Female, age 91, right hemisphere 113.3
2286 Male, age 75, left hemisphere 105.5
1806 Female, age 85, left hemisphere 104.2
1783 Male, age 74, unknown 103.4
2698 Female, age 72, unknown 102.2
2391 Female, age 94, left hemisphere 101.5
2824 Male, age 61, right hemisphere 100.1
2732 Male, age 80, right hemisphere 93.4
Nucleus basalis of Meynert
nTPM: 96.6
2393 Male, age 80, right hemisphere 97.8
2569 Male, age 61, both hemispheres 97.8
2821 Male, age 75, both hemispheres 95.6
2484 Female, age 94, left hemisphere 95.2
Nucleus of the diagonal band
nTPM: 101.2
1812 Female, age 91, both hemispheres 106.9
2775 Male, age 80, right hemisphere 105.4
2195 Female, age 85, both hemispheres 102.1
2029 Male, age 61, right hemisphere 98.7
1979 Male, age 74, unknown 93.1
Olfactory tubercle
nTPM: 98.2
1846 Male, age 80, right hemisphere 105.3
1998 Female, age 91, both hemispheres 101.8
2487 Female, age 94, left hemisphere 93.8
2856 Male, age 75, right hemisphere 91.9
Putamen
nTPM: 99.4
1838 Male, age 80, right hemisphere 105.3
2466 Female, age 79, unknown 104.7
1937 Female, age 91, right hemisphere 102.9
2482 Female, age 94, left hemisphere 101.8
1829 Male, age 74, unknown 98.0
2647 Male, age 75, left hemisphere 93.0
2489 Female, age 72, unknown 89.9
Septal nuclei
nTPM: 99.2
2031 Female, age 72, unknown 109.6
1960 Male, age 74, unknown 106.6
2009 Female, age 91, both hemispheres 100.6
2629 Female, age 94, right hemisphere 97.2
2059 Female, age 85, both hemispheres 96.5
2199 Male, age 80, right hemisphere 93.1
2394 Male, age 61, left hemisphere 90.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 113.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 101.7
Samples: 246

Max nTPM: 184.6
Min nTPM: 63.0
Std nTPM: 20.4
Median nTPM: 99.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 184.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 175.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 161.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 156.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 154.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 154.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 151.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 150.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 149.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 148.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 148.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 113.2
Samples: 246

Max nTPM: 200.7
Min nTPM: 60.6
Std nTPM: 23.2
Median nTPM: 111.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 200.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 191.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 189.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 177.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 167.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 165.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 163.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 163.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 163.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 159.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 157.6
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Brain - Putamen (basal ganglia)
Average nTPM: 105.1
Samples: 205

Max nTPM: 167.5
Min nTPM: 66.7
Std nTPM: 19.7
Median nTPM: 102.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 167.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 159.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 155.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 153.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 147.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 147.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 147.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 147.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 144.2
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 144.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 143.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.9
FF:10164-103B2 76 years, female 38.9
Globus pallidus
Scaled Tags Per Million: 29.2
FF:10161-103A8 76 years, female 33.9
FF:10175-103C4 60 years, female 24.4
Nucleus accumbens
Scaled Tags Per Million: 28.6
FF:10037-101F1 23-56 years, mixed 28.6
Putamen
Scaled Tags Per Million: 54.2
FF:10176-103C5 60 years, female 54.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.8
Pig sample Sample description nTPM
Caudate
nTPM: 52.8
Samples: 4

Max nTPM: 59.8
Min nTPM: 48.6
Sample A Female 48.6
Sample B Female 53.4
Sample C Male 59.8
Sample D Male 49.3
Putamen
nTPM: 59.8
Samples: 4

Max nTPM: 78.4
Min nTPM: 49.8
Sample A Female 53.5
Sample B Female 49.8
Sample C Male 78.4
Sample D Male 57.6
Septum
nTPM: 57.6
Samples: 4

Max nTPM: 65.5
Min nTPM: 51.0
Sample A Female 60.2
Sample B Female 51.0
Sample C Male 65.5
Sample D Male 53.5
Ventral pallidum
nTPM: 53.7
Samples: 4

Max nTPM: 63.2
Min nTPM: 47.7
Sample A Female 48.4
Sample B Female 55.5
Sample C Male 63.2
Sample D Male 47.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 197.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 186.0
Samples: 4

Max nTPM: 189.8
Min nTPM: 179.9
Sample A Male 188.4
Sample B Male 185.9
Sample C Female 179.9
Sample D Female 189.8
Septum
nTPM: 197.0
Samples: 4

Max nTPM: 221.7
Min nTPM: 172.3
Sample A Male 184.1
Sample B Male 221.7
Sample C Female 209.8
Sample D Female 172.3
Ventral forebrain
nTPM: 174.1
Samples: 4

Max nTPM: 201.0
Min nTPM: 150.7
Sample A Male 150.7
Sample B Male 182.2
Sample C Female 201.0
Sample D Female 162.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.8
75695664 Antisense, RP_060518_04_D03, Mouse strain C57BL/6J (56 days, male) 6.8
Pallidum
Expression energy: 6.9
75695664 Antisense, RP_060518_04_D03, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.