ABOUTMENU
HELP
NEWS
DDIT4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.0 nTPM
HPA:92.0 nTPM
GTEx:113.3 nTPM
FANTOM5:142.7 Scaled Tags Per Million
Pig:48.2 nTPM
Mouse:21.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
1870 Female, age 42, unknown 87.6
2828 Female, age 72, unknown 85.9
2666 Male, age 74, left hemisphere 84.7
2586 Male, age 75, left hemisphere 82.3
2411 Female, age 72, unknown 82.0
2019 Male, age 18, unknown 79.1
1827 Male, age 72, unknown 78.6
1830 Male, age 51, unknown 77.9
2219 Male, age 76, both hemispheres 77.8
1833 Male, age 53, unknown 76.9
Dorsal raphe nucleus
nTPM: 84.0
1828 Male, age 53, unknown 88.9
2047 Male, age 72, unknown 87.5
2016 Female, age 72, unknown 83.4
2750 Male, age 76, both hemispheres 82.0
2298 Female, age 72, unknown 78.0
Inferior colliculus
nTPM: 91.1
1890 Male, age 53, unknown 98.5
2849 Male, age 72, unknown 90.4
1848 Female, age 42, unknown 89.4
2097 Female, age 72, unknown 86.2
Median raphe nucleus
nTPM: 92.0
2220 Male, age 76, midline 92.0
Pedunculopontine tegmental nucleus
nTPM: 84.3
1921 Female, age 85, both hemispheres 86.1
2338 Male, age 61, both hemispheres 84.0
2334 Male, age 80, both hemispheres 82.8
Periaquaductal grey, anterior
nTPM: 75.7
2502 Female, age 75, unknown 80.9
1795 Male, age 51, unknown 77.3
1947 Male, age 18, unknown 68.9
Periaquaductal grey, dorsal
nTPM: 85.9
2850 Male, age 76, both hemispheres 89.4
1840 Male, age 53, unknown 87.6
1831 Male, age 72, unknown 83.6
2464 Female, age 72, unknown 82.9
Periaquaductal grey, lateral
nTPM: 79.4
2140 Male, age 76, both hemispheres 91.0
2053 Male, age 18, unknown 76.2
2272 Male, age 74, both hemispheres 71.0
Pretectal area
nTPM: 83.0
2667 Female, age 75, unknown 92.2
1816 Male, age 51, unknown 91.7
1817 Female, age 42, unknown 87.1
2007 Male, age 72, unknown 85.5
2316 Male, age 76, right hemisphere 83.8
1944 Female, age 72, unknown 83.1
2825 Male, age 18, unknown 81.7
1815 Male, age 53, unknown 79.2
2224 Female, age 72, unknown 76.4
2407 Male, age 75, both hemispheres 76.2
2273 Male, age 74, both hemispheres 75.8
Red nucleus
nTPM: 84.2
1954 Female, age 42, unknown 96.3
1821 Female, age 72, unknown 95.9
2588 Male, age 74, left hemisphere 88.8
2503 Female, age 72, unknown 88.7
2785 Male, age 18, unknown 83.7
1904 Male, age 53, unknown 83.0
2769 Male, age 72, unknown 82.2
2823 Male, age 76, right hemisphere 79.4
2584 Male, age 75, left hemisphere 79.2
2227 Male, age 72, unknown 78.4
1865 Male, age 51, unknown 78.2
2725 Female, age 75, unknown 76.1
Substantia nigra
nTPM: 85.6
2699 Male, age 18, unknown 110.2
2665 Male, age 74, both hemispheres 88.5
1851 Male, age 51, unknown 86.3
1889 Female, age 72, unknown 85.7
2241 Male, age 72, unknown 84.2
2409 Female, age 72, unknown 81.8
1916 Female, age 42, unknown 81.2
2583 Male, age 75, right hemisphere 80.3
1941 Male, age 53, unknown 80.2
2590 Female, age 75, unknown 77.7
Superior colliculus
nTPM: 81.1
1995 Male, age 72, unknown 85.8
1913 Female, age 42, unknown 83.3
2261 Male, age 18, unknown 83.2
1839 Male, age 51, unknown 81.9
1895 Male, age 76, right hemisphere 80.6
2587 Male, age 74, left hemisphere 80.2
2668 Female, age 75, unknown 79.7
1796 Male, age 53, unknown 79.6
2087 Female, age 72, unknown 79.2
2664 Male, age 75, both hemispheres 77.0
Ventral tegmental area
nTPM: 83.9
2021 Male, age 53, unknown 87.6
2410 Female, age 72, unknown 86.6
2218 Male, age 76, both hemispheres 84.0
2223 Female, age 72, unknown 83.8
1915 Female, age 42, unknown 83.4
1942 Male, age 51, unknown 78.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 113.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.3
Samples: 139

Max nTPM: 769.8
Min nTPM: 27.1
Std nTPM: 85.0
Median nTPM: 92.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 769.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 362.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 281.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 263.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 255.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 240.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 236.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 236.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 230.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 228.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 225.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.7
FF:10158-103A5 76 years, female 142.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.2
Pig sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 44.6
Min nTPM: 24.6
Sample A Female 44.6
Sample B Female 36.3
Sample C Male 33.7
Sample D Male 24.6
Periaqueductal gray
nTPM: 33.8
Samples: 3

Max nTPM: 36.8
Min nTPM: 27.9
Sample B Female 36.8
Sample C Male 36.7
Sample D Male 27.9
Substantia nigra
nTPM: 45.4
Samples: 4

Max nTPM: 59.6
Min nTPM: 36.5
Sample A Female 44.1
Sample B Female 59.6
Sample C Male 41.2
Sample D Male 36.5
Superior colliculi
nTPM: 48.2
Samples: 4

Max nTPM: 76.8
Min nTPM: 30.4
Sample A Female 50.2
Sample B Female 76.8
Sample C Male 35.4
Sample D Male 30.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.1
Sample A Male 21.5
Sample B Male 20.7
Sample C Female 18.1
Sample D Female 27.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
71496423 Antisense, RP_050913_04_E06, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.