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IRF2BP2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:50.2 nTPM
HPA:50.2 nTPM
GTEx:24.4 nTPM
FANTOM5:181.0 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:8.8 nTPM

CAUDATE - Antibody stainingi
Antibody HPA027815
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.9
2481 Female, age 94, left hemisphere 48.9
2289 Male, age 61, right hemisphere 42.4
2288 Male, age 75, left hemisphere 42.3
1781 Male, age 74, unknown 39.1
2290 Female, age 72, unknown 37.8
2846 Female, age 79, unknown 35.3
1854 Male, age 80, left hemisphere 33.3
1857 Female, age 85, left hemisphere 32.0
Claustrum
nTPM: 37.8
2292 Female, age 85, both hemispheres 46.0
1956 Male, age 74, unknown 40.6
2491 Male, age 75, both hemispheres 38.4
2198 Male, age 80, both hemispheres 37.8
2196 Female, age 79, unknown 37.4
2284 Female, age 91, both hemispheres 37.4
2392 Female, age 94, both hemispheres 36.6
2645 Female, age 72, unknown 33.3
2568 Male, age 61, both hemispheres 32.9
Globus pallidus, externus
nTPM: 50.1
1996 Male, age 80, right hemisphere 54.9
2772 Female, age 79, unknown 52.9
2646 Male, age 61, right hemisphere 51.8
2567 Female, age 72, unknown 47.0
2395 Male, age 75, both hemispheres 43.8
Globus pallidus, internus
nTPM: 50.2
2778 Female, age 91, both hemispheres 58.3
2111 Female, age 85, right hemisphere 54.5
2287 Male, age 75, right hemisphere 50.4
2037 Male, age 80, right hemisphere 48.0
2483 Female, age 94, right hemisphere 47.0
2566 Female, age 72, unknown 46.7
1818 Male, age 74, unknown 46.1
Nucleus accumbens
nTPM: 39.6
2732 Male, age 80, right hemisphere 50.5
2391 Female, age 94, left hemisphere 43.6
2286 Male, age 75, left hemisphere 41.3
2698 Female, age 72, unknown 38.9
1806 Female, age 85, left hemisphere 37.1
1783 Male, age 74, unknown 36.7
2824 Male, age 61, right hemisphere 35.3
1856 Female, age 91, right hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 39.8
2569 Male, age 61, both hemispheres 50.9
2484 Female, age 94, left hemisphere 39.4
2821 Male, age 75, both hemispheres 35.4
2393 Male, age 80, right hemisphere 33.4
Nucleus of the diagonal band
nTPM: 35.0
1979 Male, age 74, unknown 40.2
1812 Female, age 91, both hemispheres 35.8
2775 Male, age 80, right hemisphere 35.0
2195 Female, age 85, both hemispheres 32.4
2029 Male, age 61, right hemisphere 31.3
Olfactory tubercle
nTPM: 34.4
2487 Female, age 94, left hemisphere 35.3
1846 Male, age 80, right hemisphere 34.8
1998 Female, age 91, both hemispheres 34.8
2856 Male, age 75, right hemisphere 32.8
Putamen
nTPM: 36.7
2482 Female, age 94, left hemisphere 42.8
1829 Male, age 74, unknown 38.1
1937 Female, age 91, right hemisphere 37.5
2489 Female, age 72, unknown 37.4
2647 Male, age 75, left hemisphere 36.7
2466 Female, age 79, unknown 34.2
1838 Male, age 80, right hemisphere 30.2
Septal nuclei
nTPM: 37.4
2394 Male, age 61, left hemisphere 41.0
2199 Male, age 80, right hemisphere 39.3
2009 Female, age 91, both hemispheres 38.2
2031 Female, age 72, unknown 38.1
2059 Female, age 85, both hemispheres 37.9
1960 Male, age 74, unknown 34.2
2629 Female, age 94, right hemisphere 33.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.4
Samples: 246

Max nTPM: 80.2
Min nTPM: 12.8
Std nTPM: 8.2
Median nTPM: 23.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 80.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 54.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 54.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 49.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 45.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 44.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 42.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 42.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 40.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 80.9
Min nTPM: 10.9
Std nTPM: 7.6
Median nTPM: 21.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 80.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 68.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 42.9
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 42.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 42.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 42.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 39.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 39.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 38.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 37.6
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 36.8
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Brain - Putamen (basal ganglia)
Average nTPM: 23.4
Samples: 205

Max nTPM: 48.9
Min nTPM: 9.8
Std nTPM: 6.2
Median nTPM: 22.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 48.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 42.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 40.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 40.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 39.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 39.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 38.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 37.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 37.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 36.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 36.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.5
FF:10164-103B2 76 years, female 114.5
Globus pallidus
Scaled Tags Per Million: 181.0
FF:10161-103A8 76 years, female 189.1
FF:10175-103C4 60 years, female 172.8
Nucleus accumbens
Scaled Tags Per Million: 91.0
FF:10037-101F1 23-56 years, mixed 91.0
Putamen
Scaled Tags Per Million: 103.1
FF:10176-103C5 60 years, female 103.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Caudate
nTPM: 26.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 25.5
Sample A Female 27.0
Sample B Female 27.2
Sample C Male 26.7
Sample D Male 25.5
Putamen
nTPM: 31.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 26.6
Sample A Female 34.5
Sample B Female 26.6
Sample C Male 35.6
Sample D Male 30.4
Septum
nTPM: 29.8
Samples: 4

Max nTPM: 33.5
Min nTPM: 27.2
Sample A Female 33.5
Sample B Female 27.5
Sample C Male 31.1
Sample D Male 27.2
Ventral pallidum
nTPM: 28.9
Samples: 4

Max nTPM: 32.1
Min nTPM: 27.1
Sample A Female 27.1
Sample B Female 27.4
Sample C Male 32.1
Sample D Male 28.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 8.8
Samples: 4

Max nTPM: 9.3
Min nTPM: 8.4
Sample A Male 9.3
Sample B Male 8.6
Sample C Female 8.4
Sample D Female 9.0
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.2
Sample A Male 7.2
Sample B Male 5.6
Sample C Female 5.2
Sample D Female 7.9
Ventral forebrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.0
Min nTPM: 7.1
Sample A Male 7.6
Sample B Male 7.3
Sample C Female 7.1
Sample D Female 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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