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LGI3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.4 nTPM
HPA:43.4 nTPM
GTEx:63.2 nTPM
FANTOM5:30.8 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:85.5 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Hippocampus
nTPM: 27.5
2621 Female, age 67, right hemisphere 33.0
1898 Male, age 80, left hemisphere 32.9
1911 Female, age 85, right hemisphere 27.6
1855 Male, age 76, left hemisphere 25.0
2529 Female, age 94, left hemisphere 23.7
2148 Female, age 91, left hemisphere 22.9
Dentate gyrus
nTPM: 29.1
2530 Female, age 94, left hemisphere 46.4
2528 Male, age 74, both hemispheres 32.9
2010 Male, age 76, both hemispheres 27.3
2246 Female, age 85, both hemispheres 26.3
2531 Female, age 67, both hemispheres 21.1
1927 Female, age 91, both hemispheres 20.7
Entorhinal gyrus
nTPM: 43.0
2117 Female, age 91, right hemisphere 55.7
2764 Male, age 80, right hemisphere 52.5
2613 Female, age 94, left hemisphere 45.8
1787 Male, age 76, left hemisphere 40.9
1938 Female, age 85, left hemisphere 35.2
2686 Male, age 75, right hemisphere 28.2
Hippocampus, CA1
nTPM: 24.0
2527 Male, age 74, both hemispheres 30.5
2082 Female, age 91, right hemisphere 27.0
2749 Male, age 80, left hemisphere 26.5
1873 Female, age 85, both hemispheres 24.8
2045 Male, age 76, both hemispheres 11.1
Hippocampus, CA2
nTPM: 36.4
2437 Female, age 94, left hemisphere 48.4
2249 Male, age 74, both hemispheres 39.1
1892 Male, age 76, both hemispheres 36.8
1963 Male, age 80, left hemisphere 35.0
1940 Female, age 85, left hemisphere 30.7
2113 Female, age 91, right hemisphere 28.6
Hippocampus, CA3
nTPM: 22.8
1891 Female, age 85, both hemispheres 38.1
1867 Male, age 76, both hemispheres 35.0
2436 Male, age 74, both hemispheres 22.0
2137 Male, age 80, left hemisphere 18.1
2861 Female, age 67, both hemispheres 13.5
2620 Female, age 94, left hemisphere 9.9
Parahippocampal cortex
nTPM: 36.5
1990 Female, age 91, right hemisphere 49.1
2532 Female, age 72, left hemisphere 46.4
2692 Male, age 74, both hemispheres 45.9
1850 Male, age 80, both hemispheres 39.3
2693 Female, age 94, both hemispheres 35.8
2245 Female, age 91, both hemispheres 34.0
1933 Female, age 85, both hemispheres 33.5
2250 Female, age 67, right hemisphere 28.1
2622 Female, age 67, right hemisphere 27.0
2018 Male, age 76, both hemispheres 26.1
Perirhinal gyrus
nTPM: 37.7
1794 Male, age 80, right hemisphere 43.0
2521 Female, age 94, right hemisphere 42.1
1847 Female, age 91, left hemisphere 35.5
1841 Female, age 85, right hemisphere 34.8
2848 Male, age 76, right hemisphere 33.3
Subiculum
nTPM: 43.4
2438 Female, age 94, left hemisphere 52.9
1901 Male, age 80, both hemispheres 49.3
1977 Female, age 85, both hemispheres 45.7
2619 Male, age 74, both hemispheres 44.1
2042 Male, age 76, both hemispheres 42.6
2729 Female, age 91, right hemisphere 25.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 63.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 63.2
Samples: 197

Max nTPM: 237.8
Min nTPM: 4.3
Std nTPM: 32.4
Median nTPM: 58.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 237.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 178.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 166.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 161.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 145.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 139.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 136.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 134.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 130.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 125.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 123.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.8
FF:10153-102I9 76 years, female 31.2
FF:10169-103B7 60 years, female 30.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 24.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 8.5
Sample A Female 34.6
Sample B Female 20.2
Sample C Male 35.4
Sample D Male 8.5
Entorhinal cortex
nTPM: 16.3
Samples: 4

Max nTPM: 18.4
Min nTPM: 15.3
Sample A Female 15.6
Sample B Female 18.4
Sample C Male 15.3
Sample D Male 15.8
Subiculum
nTPM: 15.2
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.9
Sample A Female 17.7
Sample B Female 15.6
Sample C Male 14.4
Sample D Male 12.9
Ventral hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 25.9
Min nTPM: 10.2
Sample A Female 22.3
Sample B Female 10.2
Sample C Male 25.9
Sample D Male 20.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 85.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.1
Samples: 4

Max nTPM: 72.5
Min nTPM: 46.5
Sample A Male 72.5
Sample B Male 58.8
Sample C Female 58.5
Sample D Female 46.5
Hippocampal formation
nTPM: 85.5
Samples: 4

Max nTPM: 110.8
Min nTPM: 63.8
Sample A Male 63.8
Sample B Male 81.4
Sample C Female 110.8
Sample D Female 86.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
69736106 Antisense, RP_050503_04_B12, Mouse strain C57BL/6J (56 days, male) 5.9
73520996 Antisense, RP_051101_02_H03, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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