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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA:21.1 nTPM
GTEx:15.5 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:6.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
2586 Male, age 75, left hemisphere 22.9
1830 Male, age 51, unknown 20.4
1833 Male, age 53, unknown 18.8
2411 Female, age 72, unknown 18.7
2019 Male, age 18, unknown 17.6
1870 Female, age 42, unknown 16.9
2828 Female, age 72, unknown 15.9
2666 Male, age 74, left hemisphere 12.9
1827 Male, age 72, unknown 12.3
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 10.7
2750 Male, age 76, both hemispheres 17.2
2016 Female, age 72, unknown 11.5
1828 Male, age 53, unknown 10.5
2047 Male, age 72, unknown 7.1
2298 Female, age 72, unknown 6.9
Inferior colliculus
nTPM: 9.4
2849 Male, age 72, unknown 12.1
1890 Male, age 53, unknown 10.0
1848 Female, age 42, unknown 9.5
2097 Female, age 72, unknown 6.1
Median raphe nucleus
nTPM: 6.3
2220 Male, age 76, midline 6.3
Pedunculopontine tegmental nucleus
nTPM: 12.1
2334 Male, age 80, both hemispheres 14.2
2338 Male, age 61, both hemispheres 11.4
1921 Female, age 85, both hemispheres 10.6
Periaquaductal grey, anterior
nTPM: 10.0
2502 Female, age 75, unknown 12.2
1947 Male, age 18, unknown 9.6
1795 Male, age 51, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 7.6
2464 Female, age 72, unknown 11.3
1831 Male, age 72, unknown 8.3
2850 Male, age 76, both hemispheres 5.8
1840 Male, age 53, unknown 5.1
Periaquaductal grey, lateral
nTPM: 8.4
2053 Male, age 18, unknown 10.8
2272 Male, age 74, both hemispheres 7.6
2140 Male, age 76, both hemispheres 6.7
Pretectal area
nTPM: 10.2
2407 Male, age 75, both hemispheres 18.7
2316 Male, age 76, right hemisphere 18.2
1815 Male, age 53, unknown 13.2
2667 Female, age 75, unknown 13.0
2825 Male, age 18, unknown 11.2
2007 Male, age 72, unknown 8.8
1817 Female, age 42, unknown 8.3
2224 Female, age 72, unknown 7.2
2273 Male, age 74, both hemispheres 7.0
1816 Male, age 51, unknown 3.8
1944 Female, age 72, unknown 3.1
Red nucleus
nTPM: 21.1
2823 Male, age 76, right hemisphere 26.2
1904 Male, age 53, unknown 25.2
2227 Male, age 72, unknown 24.4
1865 Male, age 51, unknown 24.3
2769 Male, age 72, unknown 23.7
1821 Female, age 72, unknown 21.5
2584 Male, age 75, left hemisphere 20.1
2588 Male, age 74, left hemisphere 20.1
1954 Female, age 42, unknown 19.3
2785 Male, age 18, unknown 19.2
2503 Female, age 72, unknown 16.9
2725 Female, age 75, unknown 12.0
Substantia nigra
nTPM: 10.5
2583 Male, age 75, right hemisphere 19.5
2590 Female, age 75, unknown 12.5
1851 Male, age 51, unknown 12.1
2409 Female, age 72, unknown 12.1
2699 Male, age 18, unknown 11.7
2665 Male, age 74, both hemispheres 11.1
1889 Female, age 72, unknown 8.6
1941 Male, age 53, unknown 7.1
2241 Male, age 72, unknown 5.5
1916 Female, age 42, unknown 5.1
Superior colliculus
nTPM: 14.0
1995 Male, age 72, unknown 20.7
1913 Female, age 42, unknown 20.1
1895 Male, age 76, right hemisphere 17.4
1839 Male, age 51, unknown 16.2
2664 Male, age 75, both hemispheres 14.8
2587 Male, age 74, left hemisphere 13.1
2668 Female, age 75, unknown 12.4
1796 Male, age 53, unknown 12.2
2261 Male, age 18, unknown 8.1
2087 Female, age 72, unknown 5.2
Ventral tegmental area
nTPM: 11.6
2223 Female, age 72, unknown 15.9
2410 Female, age 72, unknown 13.0
1942 Male, age 51, unknown 11.6
2021 Male, age 53, unknown 10.2
1915 Female, age 42, unknown 9.8
2218 Male, age 76, both hemispheres 9.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.5
Samples: 139

Max nTPM: 47.3
Min nTPM: 8.1
Std nTPM: 6.1
Median nTPM: 14.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 37.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 27.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 27.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 26.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 26.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 24.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 11.8
Min nTPM: 4.9
Sample A Female 11.8
Sample B Female 4.9
Sample C Male 6.4
Sample D Male 7.1
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 5.4
Min nTPM: 3.9
Sample B Female 4.1
Sample C Male 5.4
Sample D Male 3.9
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.7
Sample A Female 6.8
Sample B Female 7.4
Sample C Male 6.7
Sample D Male 6.7
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.2
Sample A Female 8.0
Sample B Female 7.3
Sample C Male 5.2
Sample D Male 6.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.3
Sample A Male 6.0
Sample B Male 5.3
Sample C Female 6.7
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74821915 Antisense, RP_060321_02_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.